git.donarmstrong.com Git - ape.git/history

]> git.donarmstrong.com Git - ape.git/history - ChangeLog

2010-02-03	paradis	fix rTraitDisc	blob \| commitdiff \| raw
2010-02-01	paradis	final packaging for ape 2.5!	blob \| commitdiff \| raw \| diff to current
2010-01-26	paradis	updating ChangeLog file	blob \| commitdiff \| raw \| diff to current
2010-01-23	paradis	new dist.topo (to be finished) and modified multi2di	blob \| commitdiff \| raw \| diff to current
2010-01-22	paradis	new code from Pierre Legendre	blob \| commitdiff \| raw \| diff to current
2010-01-15	paradis	add delta.plot + clarify doc in write.tree.Rd	blob \| commitdiff \| raw \| diff to current
2010-01-12	paradis	new files for trait simulations	blob \| commitdiff \| raw \| diff to current
2009-12-16	paradis	small changed in add.scale.bar	blob \| commitdiff \| raw \| diff to current
2009-11-21	paradis	last changes for ape 2.4-1	blob \| commitdiff \| raw \| diff to current
2009-11-10	paradis	again...........	blob \| commitdiff \| raw \| diff to current
2009-11-03	paradis	changed rtree and rcoal	blob \| commitdiff \| raw \| diff to current
2009-10-28	paradis	some bug fixes	blob \| commitdiff \| raw \| diff to current
2009-10-05	paradis	final changes for ape 2.4 including removing mlphylo!	blob \| commitdiff \| raw \| diff to current
2009-10-02	paradis	various changes and fixes	blob \| commitdiff \| raw \| diff to current
2009-09-30	paradis	final plot.phylo and change to BOTHlabels() from Janet...	blob \| commitdiff \| raw \| diff to current
2009-09-24	paradis	finally the new plot.phylo...	blob \| commitdiff \| raw \| diff to current
2009-09-18	paradis	moved functions from ape to pegas -> ape 2.4	blob \| commitdiff \| raw \| diff to current
2009-09-16	paradis	bug fix in seg.sites + new option in base.freq	blob \| commitdiff \| raw \| diff to current
2009-09-14	paradis	typo fixing...	blob \| commitdiff \| raw \| diff to current
2009-09-09	paradis	a collection of bug fixes	blob \| commitdiff \| raw \| diff to current
2009-07-27	paradis	fixing write.nexus()	blob \| commitdiff \| raw \| diff to current
2009-07-27	paradis	fixing zoom()	blob \| commitdiff \| raw \| diff to current
2009-07-23	paradis	fixing add.scale.bar()	blob \| commitdiff \| raw \| diff to current
2009-07-20	paradis	faster nj()!!!	blob \| commitdiff \| raw \| diff to current
2009-07-14	paradis	fixing nj() with many 0 distances	blob \| commitdiff \| raw \| diff to current
2009-07-07	paradis	several bug fixes while in JKT	blob \| commitdiff \| raw \| diff to current
2009-06-23	paradis	fix a bug in drop.tip + add new option 'rooted'	blob \| commitdiff \| raw \| diff to current
2009-06-19	paradis	new is.monophyletic() + various changes/fixes	blob \| commitdiff \| raw \| diff to current
2009-06-12	paradis	removed klastorin()	blob \| commitdiff \| raw \| diff to current
2009-06-10	paradis	improved ace()	blob \| commitdiff \| raw \| diff to current
2009-06-09	paradis	fixed null model in yule.cov + various things	blob \| commitdiff \| raw \| diff to current
2009-05-19	paradis	new c.DNAbin()	blob \| commitdiff \| raw \| diff to current
2009-05-14	paradis	faster rcoal... at last!	blob \| commitdiff \| raw \| diff to current
2009-05-12	paradis	many changes.......	blob \| commitdiff \| raw \| diff to current
2009-04-27	paradis	fixed a small bug in read.tree	blob \| commitdiff \| raw \| diff to current
2009-04-01	paradis	fix on dist.gene + a few man pages corrections	blob \| commitdiff \| raw \| diff to current
2009-03-30	paradis	various changes for ape 2.3	blob \| commitdiff \| raw \| diff to current
2009-03-27	paradis	added edge.lty to plot.phylo	blob \| commitdiff \| raw \| diff to current
2009-03-23	paradis	adding contribs by Daniel Lawson	blob \| commitdiff \| raw \| diff to current
2009-03-23	paradis	change nlm to nlminb in ace() + new makeNodeLabel ...	blob \| commitdiff \| raw \| diff to current
2009-03-10	paradis	various fixes + del xenarthra	blob \| commitdiff \| raw \| diff to current
2009-03-04	paradis	correcting bug in drop.tip	blob \| commitdiff \| raw \| diff to current
2009-02-20	paradis	added the contribution of PL on CDAM	blob \| commitdiff \| raw \| diff to current
2009-02-20	paradis	new yule.time + several corrections in man pages	blob \| commitdiff \| raw \| diff to current
2009-01-20	paradis	fix to avoid uncessary warning in ace(method = "GLS")	blob \| commitdiff \| raw \| diff to current
2009-01-19	paradis	bug fix in read.nexus + new ?ape man page	blob \| commitdiff \| raw \| diff to current
2009-01-08	paradis	various updates + adding SPR+TBR in fastme.bal()	blob \| commitdiff \| raw \| diff to current
2008-12-20	paradis	bug fixed in ltt.plot.R	blob \| commitdiff \| raw \| diff to current
2008-11-24	paradis	fix bug in read.nexus()	blob \| commitdiff \| raw \| diff to current
2008-11-04	paradis	fixing bug in chronopl(, CV = TRUE)	blob \| commitdiff \| raw \| diff to current
2008-10-09	paradis	improved cbind.DNAbin for ape 2.2-2	blob \| commitdiff \| raw \| diff to current
2008-10-08	paradis	updated phymltest() for PhyML 3.0 + changed rbind.DNAbin()	blob \| commitdiff \| raw \| diff to current

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