fix rTraitDisc

[ape.git] / ChangeLog

diff --git a/ChangeLog b/ChangeLog
index b8d7c8479bbaa2611b7af40c07b621653dba4ede..b1246e0e96a7e3be82c0fa2d4511cbbf36d8cd82 100644 (file)
--- a/ChangeLog
+++ b/ChangeLog
@@ -1,4 +1,14 @@
-               CHANGES IN APE VERSION 2.5
+               CHANGES IN APE VERSION 2.5-1
+
+
+BUG FIXES
+
+    o rTraitDisc() did not use its 'freq' argument correctly (it was
+      multiplied with the rate matrix column-wise instead of row-wise).
+
+
+
+       CHANGES IN APE VERSION 2.5
 
 
 NEW FEATURES
@@ -27,6 +37,11 @@ NEW FEATURES
 
     o The branch length score replaces the geodesic distance in dist.topo.
 
+    o Three new data sets are included: the gopher-lice data (gopher.D),
+      SO2 air pollution in 41 US cities (lmorigin.ex1, from Sokal &
+      Rohlf 1995), and some host-parasite specificity data
+      (lmorigin.ex2, from Legendre & Desdevises 2009).
+
 
 BUG FIXES
 
@@ -37,6 +52,12 @@ BUG FIXES
       to Otto Cordero for the fix).
 
 
+OTHER CHANGES
+
+    o The geodesic distance has been replaced by the branch length score
+      in dist.topo().
+
+
 
                CHANGES IN APE VERSION 2.4-1