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2010-09-08	martinahansen	fixed minor bug in write_align of pairwise protein...	commit \| commitdiff \| tree
2010-09-02	martinahansen	added scores_to_dec biopiece, wiki, and tests	commit \| commitdiff \| tree
2010-09-01	martinahansen	reverting ruby unit test to old school	commit \| commitdiff \| tree
2010-09-01	martinahansen	added tests for mask_seq	commit \| commitdiff \| tree
2010-09-01	martinahansen	added mask_seq biopiece	commit \| commitdiff \| tree
2010-09-01	martinahansen	replaced option keys from strings to symbols in ruby...	commit \| commitdiff \| tree
2010-08-20	martinahansen	shifted ruby biopiece records to use symbols instead...	commit \| commitdiff \| tree
2010-08-18	martinahansen	added zip reading to read_fasta	commit \| commitdiff \| tree
2010-08-18	martinahansen	read_fasta now reads zipped fasta fails again	commit \| commitdiff \| tree
2010-08-17	martinahansen	updating test_read_fasta	commit \| commitdiff \| tree
2010-08-17	martinahansen	replacing read_fasta with ruby version	commit \| commitdiff \| tree
2010-08-17	martinahansen	replacing read_fasta with ruby version	commit \| commitdiff \| tree
2010-08-17	martinahansen	replacing read_fasta with ruby version	commit \| commitdiff \| tree
2010-08-17	martinahansen	replacing read_fasta with ruby version	commit \| commitdiff \| tree
2010-08-16	martinahansen	updating seq.rb	commit \| commitdiff \| tree
2010-08-16	martinahansen	updateing seq.rb	commit \| commitdiff \| tree
2010-08-13	martinahansen	fixed type bug in ruby code	commit \| commitdiff \| tree
2010-08-12	martinahansen	polishing testing suite	commit \| commitdiff \| tree
2010-08-12	martinahansen	added test for blast biopieces	commit \| commitdiff \| tree
2010-08-11	martinahansen	ruby code cleanup	commit \| commitdiff \| tree
2010-08-09	martinahansen	added lisence to ruby code	commit \| commitdiff \| tree
2010-08-06	martinahansen	added rdoc	commit \| commitdiff \| tree
2010-08-06	martinahansen	fixed ruby test code	commit \| commitdiff \| tree
2010-08-06	martinahansen	added swapcase_seq written in RUBY	commit \| commitdiff \| tree
2010-08-06	martinahansen	dropping swapcase_seq tobereplaced	commit \| commitdiff \| tree
2010-08-06	martinahansen	added test for analyze_gc	commit \| commitdiff \| tree
2010-08-06	martinahansen	ruby exit status battle part #12312423	commit \| commitdiff \| tree
2010-08-06	martinahansen	added -o option and tests to analyze_vals	commit \| commitdiff \| tree
2010-08-05	martinahansen	added test for add_ident	commit \| commitdiff \| tree
2010-08-05	martinahansen	added test_read_solexa to tests	commit \| commitdiff \| tree
2010-08-04	martinahansen	asdfasdr	commit \| commitdiff \| tree
2010-08-04	martinahansen	polishing ruby code	commit \| commitdiff \| tree
2010-08-04	martinahansen	added write_tab tests	commit \| commitdiff \| tree
2010-08-04	martinahansen	more polishing of testing suite	commit \| commitdiff \| tree
2010-08-04	martinahansen	removing binary crap	commit \| commitdiff \| tree
2010-08-04	martinahansen	polishing on testing suite	commit \| commitdiff \| tree
2010-08-03	martinahansen	added more tests	commit \| commitdiff \| tree
2010-08-03	martinahansen	had to fix shebang in testing env	commit \| commitdiff \| tree
2010-08-03	martinahansen	testing suite paths upgraded	commit \| commitdiff \| tree
2010-08-03	martinahansen	fixed first bug in testing suite	commit \| commitdiff \| tree
2010-08-03	martinahansen	added testing suite	commit \| commitdiff \| tree
2010-08-03	martinahansen	corrected slight bug in grab	commit \| commitdiff \| tree
2010-06-30	martinahansen	added trim_seq	commit \| commitdiff \| tree
2010-06-29	martinahansen	added biopieces mean_scores	commit \| commitdiff \| tree
2010-06-28	martinahansen	added ID to SCORE alias in KISS.pm	commit \| commitdiff \| tree
2010-06-28	martinahansen	added usearch_seq biopiece	commit \| commitdiff \| tree
2010-06-26	martinahansen	corrected typo	commit \| commitdiff \| tree
2010-06-22	martinahansen	messing with exit in ruby - still	commit \| commitdiff \| tree
2010-06-22	martinahansen	corrected type in log messages	commit \| commitdiff \| tree
2010-06-21	martinahansen	polishing exit in ruby code	commit \| commitdiff \| tree
2010-06-17	martinahansen	added list switch to *_vals biopieces	commit \| commitdiff \| tree
2010-06-17	martinahansen	added list switch to mean_vals	commit \| commitdiff \| tree
2010-06-17	martinahansen	added fixedstep biopieces	commit \| commitdiff \| tree
2010-06-16	martinahansen	schrubbing UCSC.pm code	commit \| commitdiff \| tree
2010-06-16	martinahansen	fixed s/Common/Filesys/ renaming in UCSC.pm	commit \| commitdiff \| tree
2010-06-16	martinahansen	ruby code fixing exit	commit \| commitdiff \| tree
2010-06-16	martinahansen	ruby code fixing exit	commit \| commitdiff \| tree
2010-06-15	martinahansen	ruby code schrubbing	commit \| commitdiff \| tree
2010-06-14	martinahansen	fixed unit tests for biopieces.rb	commit \| commitdiff \| tree
2010-05-28	martinahansen	trouble with list of list and class Cast	commit \| commitdiff \| tree
2010-05-28	martinahansen	splitting class Biopieces	commit \| commitdiff \| tree
2010-05-28	martinahansen	splitting class Biopieces	commit \| commitdiff \| tree
2010-05-28	martinahansen	updating ruby code	commit \| commitdiff \| tree
2010-05-28	martinahansen	cleaned up ruby dir	commit \| commitdiff \| tree
2010-05-27	martinahansen	ruby unit tests refactored	commit \| commitdiff \| tree
2010-05-27	martinahansen	updated biopieces code	commit \| commitdiff \| tree
2010-05-25	martinahansen	added plot_scores fix	commit \| commitdiff \| tree
2010-05-25	martinahansen	added plot_scores	commit \| commitdiff \| tree
2010-05-20	martinahansen	fixed missing SEQ_LEN in read_454	commit \| commitdiff \| tree
2010-05-20	martinahansen	added solexa_str_mean to read_454	commit \| commitdiff \| tree
2010-05-20	martinahansen	added bp_scripts directory and stats scripts	commit \| commitdiff \| tree
2010-05-19	martinahansen	added read_454 and write_454 (and ruby stuff)	commit \| commitdiff \| tree
2010-05-18	martinahansen	extract seq now also extract SCORES if present	commit \| commitdiff \| tree
2010-05-18	martinahansen	fixed harmless bug in remove_adaptor	commit \| commitdiff \| tree
2010-05-14	martinahansen	cleaning up ruby code dir	commit \| commitdiff \| tree
2010-05-11	martinahansen	fixed bug in write_fixedstep	commit \| commitdiff \| tree
2010-04-27	martinahansen	fixed speed issue with track_ruler in BGB	commit \| commitdiff \| tree
2010-04-26	martinahansen	optimized track_ruler in BGB	commit \| commitdiff \| tree
2010-04-20	martinahansen	added trimming of scores to remove_adaptor	commit \| commitdiff \| tree
2010-04-06	martinahansen	fixing undef $clade bug in BGB	commit \| commitdiff \| tree
2010-03-31	martinahansen	dna page session export bug in BGB	commit \| commitdiff \| tree
2010-03-30	martinahansen	fixed 0 defined bug in BGB	commit \| commitdiff \| tree
2010-03-22	martinahansen	ugly fix of BGB ladder problem	commit \| commitdiff \| tree
2010-03-22	martinahansen	fixing ladder bug in BGB	commit \| commitdiff \| tree
2010-03-19	martinahansen	added PDF/SVG export to BGB	commit \| commitdiff \| tree
2010-03-19	martinahansen	added grid to BGB	commit \| commitdiff \| tree
2010-03-18	martinahansen	added collapsable tracks to BGB	commit \| commitdiff \| tree
2010-03-18	martinahansen	BGB cleanup	commit \| commitdiff \| tree
2010-03-18	martinahansen	error handling and seq guess fix	commit \| commitdiff \| tree
2010-03-17	martinahansen	removed indexing from BGB_upload	commit \| commitdiff \| tree
2010-03-15	martinahansen	added N block switch to blat_seq	commit \| commitdiff \| tree
2010-03-14	martinahansen	fixed minor BGB bug	commit \| commitdiff \| tree
2010-03-14	martinahansen	fixed BGB issues terrible	commit \| commitdiff \| tree
2010-03-14	martinahansen	added persistent sessions to BGB	commit \| commitdiff \| tree
2010-03-13	martinahansen	fixed login issue in BGB	commit \| commitdiff \| tree
2010-03-13	martinahansen	changed BGB session format to JSON	commit \| commitdiff \| tree
2010-03-13	martinahansen	added static link to BGB	commit \| commitdiff \| tree
2010-03-08	martinahansen	tweaks to blat_seq to avoid introns in fastMap - still...	commit \| commitdiff \| tree
2010-03-05	martinahansen	layout of wiggle improved	commit \| commitdiff \| tree
2010-03-05	martinahansen	wiggle tracks display - almost there	commit \| commitdiff \| tree
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