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adding bzip2 support in ruby
[biopieces.git] / code_ruby /
2011-11-09 martinahansenfixed bug in seq.to_fasta tree | commitdiff
2011-11-01 martinahansenadded quality_trim to seq.rb along with unit tests tree | commitdiff
2011-11-01 martinahansenfixed unit tests for reverse and revcomp in seq.rb tree | commitdiff
2011-11-01 martinahansenfixed return on reverse_complement in seq.rb tree | commitdiff
2011-10-28 martinahansenadded reversing of qual to reverse tree | commitdiff
2011-10-25 martinahansenadded find_barcodes biopiece tree | commitdiff
2011-10-21 martinahansenadded shuffle! method to seq.rb tree | commitdiff
2011-10-19 martinahansenrevoked to old working version of each_interval in... tree | commitdiff
2011-10-19 martinahansenworked on each_interval, but still too slow tree | commitdiff
2011-10-19 martinahansenspeed optimized interval_set and interval_unset in... tree | commitdiff
2011-10-18 martinahansenrewrote interval_set in bitarray.rb = 20 x faster tree | commitdiff
2011-10-18 martinahansenmemory optimization on bitarray.rb tree | commitdiff
2011-10-17 martinahansenadded more methods to bitarray.rb tree | commitdiff
2011-10-17 martinahansenadded methods to bitarray.rb tree | commitdiff
2011-10-17 martinahansenbitarray.rb bits_on method speedup x 3 tree | commitdiff
2011-10-17 martinahansencleanup of bitarray.rb tree | commitdiff
2011-10-17 martinahansenchanged bitwise operators in bitarray to inline tree | commitdiff
2011-10-17 martinahansenupgraded bitarray to work with narray for speed tree | commitdiff
2011-10-17 martinahansenadded comment to bitarray.rb tree | commitdiff
2011-10-13 martinahansenfixed fastq issue tree | commitdiff
2011-10-13 martinahansensmoothed ruby code to get rid of warnings tree | commitdiff
2011-10-13 martinahansenbeautifying fasta.rb tree | commitdiff
2011-10-13 martinahansenadded Class method Seq.new_bp to seq.rb tree | commitdiff
2011-10-13 martinahansenadded to_fastq method seq.rb tree | commitdiff
2011-10-12 martinahansenadded crufty puts method to fastq.rb tree | commitdiff
2011-10-06 martinahansenfixed alignment descriptors in sam.rb tree | commitdiff
2011-09-23 martinahansenremoved bad method from fastq.rb tree | commitdiff
2011-09-23 martinahansenfixed mistakes in test_fasta.rb tree | commitdiff
2011-09-23 martinahansenfixed newline to rec seperator in seq.rb tree | commitdiff
2011-09-19 martinahansenfixed grave bug in genbank.rb tree | commitdiff
2011-09-06 martinahansenfixed typo in test_biopieces.rb tree | commitdiff
2011-09-05 martinahansenadded hamming_distance method to seq.rb tree | commitdiff
2011-09-05 martinahansenpolishing on sam.rb tree | commitdiff
2011-09-05 martinahansenspeedup of bits.rb tree | commitdiff
2011-09-05 martinahansenspeedup of bits.rb tree | commitdiff
2011-09-05 martinahansenpolished test_cigar.rb tree | commitdiff
2011-09-01 martinahansenpolish of cigar.rb tree | commitdiff
2011-08-31 martinahansencorrected bug in sam.rb tree | commitdiff
2011-08-31 martinahansensam update tree | commitdiff
2011-08-31 martinahansenworked on sam - added 1 to phred score check in seq.rb tree | commitdiff
2011-08-29 martinahansenadded cigar.rb and test_cigar.rb tree | commitdiff
2011-08-29 martinahansenworking on sam.rb tree | commitdiff
2011-08-24 martinahansenworked on unit tests for sam.rb tree | commitdiff
2011-08-24 martinahansenworked on unit tests for sam.rb tree | commitdiff
2011-08-24 martinahansenworked on unit tests for sam.rb tree | commitdiff
2011-08-24 martinahansenworked on unit tests for sam.rb tree | commitdiff
2011-08-24 martinahansenworked on unit tests for sam.rb tree | commitdiff
2011-08-24 martinahansenworked on unit tests for sam.rb tree | commitdiff
2011-08-23 martinahansenworked on unit tests for sam.rb tree | commitdiff
2011-08-23 martinahansenworked on unit tests for sam.rb tree | commitdiff
2011-08-23 martinahansenworked on unit tests for sam.rb tree | commitdiff
2011-08-23 martinahansenworked on unit tests for sam.rb tree | commitdiff
2011-08-23 martinahansenworked on unit tests for sam.rb tree | commitdiff
2011-08-22 martinahansenworked on sam.rb tree | commitdiff
2011-06-17 martinahansenadded sam.rb to ruby trunk tree | commitdiff
2011-06-17 martinahansenadded sam.rb to ruby trunk tree | commitdiff
2011-06-13 martinahansenadded Seq.type_guess to ruby code tree | commitdiff
2011-05-23 martinahansenfixed critical bug in biopieces.rb and reworked find_ad... tree | commitdiff
2011-05-23 martinahansencommitting major ruby overhaul tree | commitdiff
2011-05-19 martinahansenfiddleling with biopieces.rb tree | commitdiff
2011-05-19 martinahansenpreparing biopieces.rb rewrite tree | commitdiff
2011-05-18 martinahansenfixed a path in biopieces.rb tree | commitdiff
2011-05-18 martinahansenrefactored patternmatcher tree | commitdiff
2011-05-13 martinahansenupdated 00README file in ruby dir tree | commitdiff
2011-05-13 martinahansencleaning up old ruby trunk tree | commitdiff
2011-05-13 martinahansenchanged layout of ruby source tree | commitdiff
2011-05-11 martinahansen1 vector only patternmatcher.rb now :o) tree | commitdiff
2011-05-10 martinahansenadded procedure switch to find_genes tree | commitdiff
2011-05-09 martinahansenadded coverage method to prodigal.rb tree | commitdiff
2011-05-09 martinahansenadded prodigal.rb tree | commitdiff
2011-05-09 martinahansenupdated genbank.rb to allow empty defaults tree | commitdiff
2011-05-04 martinahansenfixed default cast for lists in biopieces.rb tree | commitdiff
2011-05-02 martinahansencode update tree | commitdiff
2011-04-19 martinahansenfixed bit fields in pattern matcher tree | commitdiff
2011-04-18 martinahansenadded find_adaptor biopiece tree | commitdiff
2011-04-16 martinahansencleaned patternmatcher code tree | commitdiff
2011-04-15 martinahansenpattern hell tree | commitdiff
2011-04-14 martinahansenupdated patternmatcher code tree | commitdiff
2011-03-30 martinahansenreverted patternmatcher to original tree | commitdiff
2011-03-30 martinahansenupdated find_mids tree | commitdiff
2011-03-29 martinahansenseq.rb update tree | commitdiff
2011-03-29 martinahansenadded final unit test to test_patternmatcher.rb tree | commitdiff
2011-03-29 martinahansenfixed Rakefile tree | commitdiff
2011-03-29 martinahansenremoved amatch dependency in ruby code tree | commitdiff
2011-03-28 martinahansenfixed patternmatcher.rb tree | commitdiff
2011-03-28 martinahansenadded PatternMatcher to ruby code tree | commitdiff
2011-03-20 martinahansenplain and hd match in ruby Seq.rb now works tree | commitdiff
2011-03-19 martinahansenworked on match code in Seq.rb tree | commitdiff
2011-03-19 martinahansenadded rdoc stuff tree | commitdiff
2011-03-19 martinahansenworked on match code for ruby Seq class tree | commitdiff
2011-03-19 martinahansenadded test_digest.rb tree | commitdiff
2011-03-19 martinahansensplit digest.rb from seq.rb tree | commitdiff
2011-03-19 martinahansenremoving align.rb code tree | commitdiff
2011-03-19 martinahansenremoving align.rb code tree | commitdiff
2011-03-19 martinahansencleanup of Filsys in ruby code tree | commitdiff
2011-03-18 martinahansenfilesys now polished tree | commitdiff
2011-03-18 martinahansenadded filesys tree | commitdiff
2011-03-18 martinahansenfixed stdin read for fastq and ruby code tree | commitdiff
2011-03-18 martinahansenpolishing stdin for ruby code tree | commitdiff
2011-03-17 martinahansenruby cleanup tree | commitdiff
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