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fixed bug in Seq.pm
[biopieces.git] / code_perl /
2009-08-10 martinahansenadded --logscale_y switch to relevant plot_* biopieces tree | commitdiff
2009-08-04 martinahansenadded a skip_scores switch to read_solexa and read_fastq tree | commitdiff
2009-08-02 martinahansenfix embl parser tree | commitdiff
2009-08-02 martinahansenfinishing read_embl tree | commitdiff
2009-08-02 martinahansenadded get_embl_entry tree | commitdiff
2009-07-29 martinahansenadded embl_index tree | commitdiff
2009-07-29 martinahansenadded .biopiecesrc tree | commitdiff
2009-07-28 martinahansenfinished write_mysql tree | commitdiff
2009-07-28 martinahansenchanged read_solexa tree | commitdiff
2009-07-28 martinahansenadded quality threshold to read_fastq tree | commitdiff
2009-07-27 martinahansenadded write_mysql tree | commitdiff
2009-07-27 martinahansenfixed list_mysql_databases tree | commitdiff
2009-07-27 martinahansenadded list_mysql_databases tree | commitdiff
2009-07-24 martinahansenfixed Gwiki colors tree | commitdiff
2009-07-23 martinahansenfixed bowtie_seq tree | commitdiff
2009-07-23 martinahansenadded Bowtie.pm tree | commitdiff
2009-07-23 martinahansenaddid term colors to list_genomes tree | commitdiff
2009-07-21 martinahansenfixed bowtie_seq tree | commitdiff
2009-07-20 martinahansenadded bowtie_seq biopiece tree | commitdiff
2009-07-20 martinahansenadded bowtie to format_genome tree | commitdiff
2009-07-10 martinahansenspeedup of analyze_seq 3 fold tree | commitdiff
2009-07-10 martinahansenadded str_analyze to Common.pm tree | commitdiff
2009-07-08 martinahansenuse warnings added to perl modules tree | commitdiff
2009-07-07 martinahansenminor changes tree | commitdiff
2009-06-23 martinahansenfixes and stuff tree | commitdiff
2009-06-17 martinahansenfixed a number of bugs in PSL tree | commitdiff
2009-06-16 martinahansenfixed perl5.10 issue for soft parser tree | commitdiff
2009-06-16 martinahansenfixed bug in time_stamp_diff tree | commitdiff
2009-06-15 martinahansenadded indel_seq tree | commitdiff
2009-06-15 martinahansenadded mutate_seq tree | commitdiff
2009-06-15 martinahansenfixed bug in Fasta.pm tree | commitdiff
2009-06-08 martinahansenfixed minor bugs tree | commitdiff
2009-06-06 martinahansenfixed bug in format_genome tree | commitdiff
2009-06-06 martinahansenfixes but in removal of tmp_dir tree | commitdiff
2009-06-06 martinahansenfixes done to tmp_dir tree | commitdiff
2009-06-06 martinahansenfixing status tree | commitdiff
2009-06-05 martinahansenadded align_pair_seq tree | commitdiff
2009-06-05 martinahansenmigration done tree | commitdiff
2009-06-05 martinahansenalmost done tree | commitdiff
2009-06-05 martinahansenmigrated removers tree | commitdiff
2009-06-05 martinahansenmigrated upload_to_ucsc tree | commitdiff
2009-06-04 martinahansenalmost there tree | commitdiff
2009-06-04 martinahansenfixed a couple of bugs - good tree | commitdiff
2009-06-02 martinahansenbleh blah tree | commitdiff
2009-06-02 martinahansenremove bin dir tree | commitdiff
2009-06-02 martinahansen3 more again tree | commitdiff
2009-06-02 martinahansen3 more tree | commitdiff
2009-06-02 martinahansenmore read_ tools migrated tree | commitdiff
2009-06-02 martinahansenmigrating read_ tools tree | commitdiff
2009-06-02 martinahansenmigration of all write tools done tree | commitdiff
2009-06-02 martinahansenmigrated 3 write tools tree | commitdiff
2009-05-29 martinahansenmigrated final plotters tree | commitdiff
2009-05-29 martinahansenmigrated plot_lendist tree | commitdiff
2009-05-29 martinahansenmigrated plot_karyogram tree | commitdiff
2009-05-29 martinahansenmigrated plot_histogram tree | commitdiff
2009-05-29 martinahansenmigrated plot_chrdist tree | commitdiff
2009-05-28 martinahansenmigrated remove_adaptor tree | commitdiff
2009-05-28 martinahansenmigrated 4 more tree | commitdiff
2009-05-28 martinahansenmigrated tile_seq tree | commitdiff
2009-05-28 martinahansenmigrated sort_records tree | commitdiff
2009-05-28 martinahansenmigrated sum_vals tree | commitdiff
2009-05-28 martinahansenmigrated patscan_seq tree | commitdiff
2009-05-27 martinahansenmigrated oligo_freq tree | commitdiff
2009-05-27 martinahansenmigrated trans family tree | commitdiff
2009-05-27 martinahansenmigrated merge_records tree | commitdiff
2009-05-27 martinahansenmigrated max, min, mean, and median _vals tree | commitdiff
2009-05-27 martinahansenmigrated match_seq tree | commitdiff
2009-05-27 martinahansenadded 3 more tree | commitdiff
2009-05-26 martinahansenmigrated 3 biopieces tree | commitdiff
2009-05-26 martinahansenmigrated create_vmatch_index tree | commitdiff
2009-05-26 martinahansenmigrated create_weight_matrix tree | commitdiff
2009-05-26 martinahansenmigrated count_vals tree | commitdiff
2009-05-26 martinahansenmigrated count_records tree | commitdiff
2009-05-26 martinahansenmigrated and fixed calc_fixedstep tree | commitdiff
2009-05-25 martinahansenmigrated calc_bit_scores tree | commitdiff
2009-05-25 martinahansenmigrated blat_seq tree | commitdiff
2009-05-24 martinahansenmigrated assemble_tag_contigs tree | commitdiff
2009-05-24 martinahansenmigrated split biopieces tree | commitdiff
2009-05-24 martinahansenmigrated random_records tree | commitdiff
2009-05-24 martinahansenmagrated analyze biopieces tree | commitdiff
2009-05-24 martinahansenmigrated write_align tree | commitdiff
2009-05-24 martinahansenmigrated align_seq tree | commitdiff
2009-05-24 martinahansenmigrated add_ident tree | commitdiff
2009-05-24 martinahansenmigrated complement_seq and reverse_seq tree | commitdiff
2009-05-23 martinahansenmigrated extract_seq tree | commitdiff
2009-05-23 martinahansenrewrite begin tree | commitdiff
2009-05-13 martinahansenmoved all binaries and created symlinks instead tree | commitdiff
2009-05-12 martinahansensplit Biopieces.pm into BioRun.pm and Biopieces.pm tree | commitdiff
2009-05-12 martinahansenchanged wiki renderer tree | commitdiff
2008-12-17 martinahansenfixed BED BUG tree | commitdiff
2008-12-11 martinahansenlots of PSL related changes tree | commitdiff
2008-12-11 martinahansenadded exon capabilities to calc_fixedstep tree | commitdiff
2008-12-11 martinahansencalc_fixedstep reverted to perl tree | commitdiff
2008-12-11 martinahansenfixed carriage return bug in read_ucsc_config tree | commitdiff
2008-12-09 martinahansenadded splice to get_genome_seq tree | commitdiff
2008-12-09 martinahansenfixed bug in remove_ucsc_tracks tree | commitdiff
2008-12-08 martinahansenminor fixes tree | commitdiff
2008-12-08 martinahansenadded --check to a number of Biopieces tree | commitdiff
2008-12-08 martinahansenreverting to BED lists tree | commitdiff
2008-12-08 martinahansenchanged BED.pm from list to hash tree | commitdiff
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