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added test for blast biopieces
[biopieces.git] / bp_bin /
2010-08-09 martinahansenadded lisence to ruby code tree | commitdiff
2010-08-06 martinahansenadded swapcase_seq written in RUBY tree | commitdiff
2010-08-06 martinahansendropping swapcase_seq tobereplaced tree | commitdiff
2010-08-06 martinahansenadded -o option and tests to analyze_vals tree | commitdiff
2010-08-03 martinahansencorrected slight bug in grab tree | commitdiff
2010-06-30 martinahansenadded trim_seq tree | commitdiff
2010-06-29 martinahansenadded biopieces mean_scores tree | commitdiff
2010-06-28 martinahansenadded usearch_seq biopiece tree | commitdiff
2010-06-17 martinahansenadded list switch to *_vals biopieces tree | commitdiff
2010-06-17 martinahansenadded list switch to mean_vals tree | commitdiff
2010-06-17 martinahansenadded fixedstep biopieces tree | commitdiff
2010-06-16 martinahansenschrubbing UCSC.pm code tree | commitdiff
2010-05-25 martinahansenadded plot_scores fix tree | commitdiff
2010-05-25 martinahansenadded plot_scores tree | commitdiff
2010-05-20 martinahansenfixed missing SEQ_LEN in read_454 tree | commitdiff
2010-05-20 martinahansenadded solexa_str_mean to read_454 tree | commitdiff
2010-05-19 martinahansenadded read_454 and write_454 (and ruby stuff) tree | commitdiff
2010-05-18 martinahansenextract seq now also extract SCORES if present tree | commitdiff
2010-05-18 martinahansenfixed harmless bug in remove_adaptor tree | commitdiff
2010-05-11 martinahansenfixed bug in write_fixedstep tree | commitdiff
2010-04-20 martinahansenadded trimming of scores to remove_adaptor tree | commitdiff
2010-03-17 martinahansenremoved indexing from BGB_upload tree | commitdiff
2010-03-15 martinahansenadded N block switch to blat_seq tree | commitdiff
2010-03-08 martinahansentweaks to blat_seq to avoid introns in fastMap - still... tree | commitdiff
2010-03-03 martinahansenadded find_gaps tree | commitdiff
2010-03-02 martinahansenmerged BGB::Common.pm to BGB::Track.pm tree | commitdiff
2010-03-01 martinahansenadded wiggle to BGB tree | commitdiff
2010-02-11 martinahansenadded option for database search to blat_seq tree | commitdiff
2010-02-09 martinahansenmoving back to binned index and using JSON for storing tree | commitdiff
2010-02-06 martinahansenremoved dir check from create_bowtie_index tree | commitdiff
2010-02-06 martinahansenshifted to NC list in BGB tree | commitdiff
2010-02-06 martinahansenadded uniq_seq tree | commitdiff
2010-02-06 martinahansenfix of read_kiss code comments tree | commitdiff
2010-01-31 martinahansenfixed sequence type guessing in create_blast_index tree | commitdiff
2010-01-26 martinahansenfixed a number of issues - grave bug in complement_seq! tree | commitdiff
2010-01-25 martinahansenadd q_id specificity to assemblo_contigs tree | commitdiff
2010-01-25 martinahansenadded strand specificity fo assemble_contigs tree | commitdiff
2010-01-24 martinahansencleanup BGB stuff tree | commitdiff
2010-01-21 martinahansenadded plot_lines tree | commitdiff
2010-01-19 martinahansenchanged uclust engine from CD-hit to uclust tree | commitdiff
2010-01-13 martinahansenchanged engine in cluster_seq to uclust tree | commitdiff
2010-01-12 martinahansenadded cluster_seq tree | commitdiff
2010-01-05 martinahansencleanup of BGB tree | commitdiff
2009-12-25 martinahansenadded BGB_delete_track tree | commitdiff
2009-12-17 martinahansenadded BGB_read_track tree | commitdiff
2009-12-16 martinahansenfixed bug in grab tree | commitdiff
2009-12-15 martinahansenfixed bug in list_biopieces tree | commitdiff
2009-12-15 martinahansenadded find_genes tree | commitdiff
2009-12-15 martinahansenfixed upload pipe tree | commitdiff
2009-12-14 martinahansenadded BGB_intersect tree | commitdiff
2009-12-14 martinahansenrenamed upload_to_bbrowser to BGB_upload tree | commitdiff
2009-12-14 martinahansenadded BGB_list tree | commitdiff
2009-12-11 martinahansenfixed bug in translate_seq tree | commitdiff
2009-12-10 martinahansenfixed bug in uploader tree | commitdiff
2009-12-10 martinahansenfixed bug in upload_to_bbrowser tree | commitdiff
2009-12-08 martinahansenadded read_ace tree | commitdiff
2009-12-01 martinahansenfixed IO rename in write_kiss tree | commitdiff
2009-12-01 martinahansenrename mistake fix2 tree | commitdiff
2009-12-01 martinahansenrename mistake fix1 tree | commitdiff
2009-12-01 martinahansenrenamed KISS browser to Biopiece browser tree | commitdiff
2009-11-25 martinahansenmore KISS tree | commitdiff
2009-11-24 martinahansenkiss_sort() tree | commitdiff
2009-11-24 martinahansenfixed KISS tree | commitdiff
2009-11-24 martinahansenrewrote upload_to_KISS tree | commitdiff
2009-11-16 martinahansenhacked read_soft to deal with soft_files wo platform... tree | commitdiff
2009-11-16 martinahansenmisc changes tree | commitdiff
2009-11-09 martinahansenadded analyze_snp tree | commitdiff
2009-11-04 martinahansenfixed details in bowtie_seq tree | commitdiff
2009-10-30 martinahansenadded read_sam tree | commitdiff
2009-10-29 martinahansenfixed bug in patscan_seq tree | commitdiff
2009-10-29 martinahansenmodified split_seq tree | commitdiff
2009-10-27 martinahansenmore work on KISS tree | commitdiff
2009-10-27 martinahansenrevised KISS format tree | commitdiff
2009-10-23 martinahansenremoved jbrowse support tree | commitdiff
2009-10-21 martinahansenchanged KISS format tree | commitdiff
2009-10-21 martinahansenadded upload_to_KISS tree | commitdiff
2009-10-21 martinahansenadded kiss biopieces tree | commitdiff
2009-10-21 martinahansenfixed dna/DNA bug in Align.pm tree | commitdiff
2009-10-18 martinahansenadded write_gff tree | commitdiff
2009-10-17 martinahansenrenaming create_blast_db to create_blast_index tree | commitdiff
2009-10-17 martinahansenchanged options in create_blast_db tree | commitdiff
2009-09-30 martinahansenfixed bug in get_genome_seq tree | commitdiff
2009-09-28 martinahansenadded bwa_seq tree | commitdiff
2009-09-21 martinahansenadded assemble_contigs tree | commitdiff
2009-09-21 martinahansenadded format to compute tree | commitdiff
2009-09-21 martinahansencleaned up calc_fixedstep tree | commitdiff
2009-09-18 martinahansenadded features to calc_fixedstep tree | commitdiff
2009-09-18 martinahansenadded strand to assemble_tag_contigs tree | commitdiff
2009-09-18 martinahansenadded ugly hack to assemble_tag_contigs tree | commitdiff
2009-09-17 martinahansenadded get_seq tree | commitdiff
2009-09-16 martinahansenfixed match_seq bug tree | commitdiff
2009-09-09 martinahansenadded BED entry output to check_bed tree | commitdiff
2009-09-08 martinahansenadded BWA index support tree | commitdiff
2009-09-08 martinahansenunfucked bowtie_index tree | commitdiff
2009-09-08 martinahansenfuckup tree | commitdiff
2009-09-07 martinahansensanitized create_bowtie_index code tree | commitdiff
2009-09-07 martinahansensanitized create_bowtie_seq tree | commitdiff
2009-09-07 martinahansenfixed solexa/phred code tree | commitdiff
2009-09-04 martinahansenchanged options of read_solexa and read_fastq - undocum... tree | commitdiff
2009-09-04 martinahansenadded mate_pair_dist tree | commitdiff
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