added tests for assemble_pairs biopiece

git-svn-id: http://biopieces.googlecode.com/svn/trunk@2083 74ccb610-7750-0410-82ae-013aeee3265d

diff --git a/bp_test/in/assemble_pairs.in b/bp_test/in/assemble_pairs.in
new file mode 100644 (file)
index 0000000..82a4fbb
--- /dev/null
+++ b/bp_test/in/assemble_pairs.in
@@ -0,0 +1,50 @@
+SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:14862:1868 1:N:0:14
+SEQ: TGGGGAATATTGGACAATGGGGGCAACCCTGATCCAGCAATACCGCGTGTGTGAAGAAGGCCTGAGGGTTGTAAAGCACTTTCAATTGTGAAGAAAAGTTAACGGTTAATAACCGTTAGCCTTGACGTTAACTTTAGAAGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGTAGGCGGTTTATTCAGTCAGATGTG
+SEQ_LEN: 249
+SCORES: [^^^^^^accccccccfffffffgghhhdghggeffgeggfgeggcgdgdgge`eefeegeggeegggdeddggggggggggggeeegeggggggggggggfacdffffffffffffffffdfdfffffbdffffdbbdbdddbfff[`cfbfffdffdfffffdfbdW]Q]cb[dddffb^[cfbbbdbYb^bbdffffbbH^dfddY^bWSMFWOIYbW^b]^^QbdQQMSWbY^Ibb^YbIY^b^b
+---
+SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:14862:1868 2:N:0:14
+SEQ: CCTGTTTGCTACCCACGCTTTCGTACCTCAGCGTCAGTATTGGTCCAGAAAGCTGCCTTCGCCATTGATGTTCCTTCTGATATCTACGCATTTCACCGCTACACCAGAAATTCCACTTTCCTCTACCATACTCTAGTTGACCAGTTTCAAATGCAGTTCCCAGGTTAAGCCCGGGGCTTTCACATCTGACTTAATAAACCGCCTACGCACGCTTTACGCCCAGTAATTC
+SEQ_LEN: 229
+SCORES: ^^^^^aa[L[accccceddeeegeeghZeZdfggcgdeX^dbcb^eeeeeffefghg^fecdd]dggeebfegghhhhhgggghgcgeggggccfffgggggggggeee_eec]aeceaea^\ccd\cdcddcacdadbed`\bad``beb`KK\\bd\\KK\HIP^`YYY^WcWFSZ``YYb`bddd^`^``bddddbIFSWHMOHF`Zc^`HHIPOWMM^IPIPYYY
+---
+SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:13906:2139 1:N:0:14
+SEQ: TAGGGAATCTTGCACAATGGAGGAAACTCTGATGCAGCGATGCCGCGTGAGTGAAGAAGGCCTTTGGGTTGTAAAGCTCTTTCGTCGGGGAAGAAAATGACTGTACCCGAATAAGAAGGTCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGACCTAGCGTAGTTCGGAATTACTGGGCTTAAAGAGTTCGTAGGTGGTTAAAAACGTTGGTGGTGAAATCCCAGAGCTTAACGCTGGAACTG
+SEQ_LEN: 251
+SCORES: [^^^X^aaacaccacceeeeeeggghegegghggeggggdccdfgggbdgd^degefgegeghghhhgbdbdgggheghhhgfgeggggggddeeeeeddeeedeeedddddeeeeeeebdeaddcdeeeeeededeeddeeeecccc`^dddeedddcdb`dd^Y`c``]`ddec`^bddeY^b`Wdddd`dddY``bdeedbdddd^Y^b`HMOY`dWWHMOYYbdddddb^`IY``YIHMM^]`ddeY
+---
+SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:13906:2139 2:N:0:14
+SEQ: TCTTCGCTACCCATGCTTTCGTTCCTCAGCGTCAGTAATGATCCAGAAAGCTGCCTTCGCAATCGGTATTCTTTCTAATATCTACGAATTTCACCTCTACACTAGAAATTCTGCTTTCCTCTATCATACTCTAGCTAAAAAGTTTTGATGGCAGTTCCAGAGTTAAGCTCTGGGATTTCACCACCAACTTTTTTAACCACCTACGAACTCTTTAAGCCCAGTAATTCCGAACTACGCTAGGTCCCTT
+SEQ_LEN: 247
+SCORES: [^^aa^cc`acacceeeeeegeghgegghhgdgdge^d^Obcefeegghgeeegggfc_d_dcaeg]Tdfggghhhffbfgggeghgg`eabffffggeeegeeegegee^ccacegM^eeeeeaeeedcdddedee\acddddbbdd`\`a\^bdb\`bK[T\adYbdI^I^d^I^YIYIPYW^`^`ddedd]dYIPYW`ddd^H^W^Y^Ybd`d``dIWP^I^bddYW^^IIPHTMHMW`IY`Y^
+---
+SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:14865:2158 1:N:0:14
+SEQ: TAGGGAATCTTGCACAATGGAGGAAACTCTGATGCAGCGATGCCGCGTGAGTGAAGAAGGCCTTTGGGTTGTAAAGCTCTTTCGTCGGGGAAGAAAATGACTGTACCCGAATAAGAAGGTCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGACCTAGCGTAGTTCGGAATTACTGGGCTTAAAGAGTTCGTAGGTGGTTAAAAAAGTTGGTGGTGAAATCCCAGAGCTTAACTCTGGAACT
+SEQ_LEN: 250
+SCORES: ^^^^^aaaaaccaccaeeeeeedbgegegegfggefc^]begggggg]cddeeeeceege_eggghegddggghhggghghgggcdggggeddeee^eddddeddeeddY]bddedeeeadddddcdedYY`dY^`dbdede^`]ZcWWZbdddded`Z`dbdddbdZO^]OY``c``dbdeedddbd``bdYb`YI^bW^bdYYbdW`bb`YS^Y`bYWWWWHYIY^d`IYYWIIPIIPP^^Yd^b`Y^
+---
+SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:14865:2158 2:N:0:14
+SEQ: CTTCGCTACCCATGCTTTCGTTCCTCAGTGTCAGTAATGATCCAGAAAGCTGCCTTCGCAATCGGTATTCTTTCTAATATCTACGAATTTCACCTCTACACTAGAAATTCTGCTTTCCTCTATCATACTCTAGCTAAAAAGTTTTGATGGCAGTTCCAGAGTTAAGCTCTGGGATTTCACCACCAACTTTTTTAACCACCTACGAACTCTTTAAGCCCAGTAATTCCGAACTACGCTAGGTCCCTTC
+SEQ_LEN: 247
+SCORES: [^^a^aa^aaaaaee^eeegZegeegafObX`egb^e\^bb^ee\b^daeffgcgggeccdcc_d]beggghggg^^`dfegb^edeeeabdfggeggefgggeggebcM_ccegg^eeee\b^aeeecee^aec\ZccddcddddddZbbadddda^a^^a^b^aZd^da`YNY`b^`YI^d`b``I^bdbZINOIY^`bb``^b^ddddddY`YIWOOY``Y`ddYHOS^^Y`ZW`^b`NOIYY`
+---
+SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:17246:2253 1:N:0:14
+SEQ: AGGGAATCTTGCACAATGGGGGAAACCCTGATGCAGCGATGCCGCGTGAGTGAAGAAGGCCCTTGGGTTGTAAAGCTCTTTCGTCGGGGAAGAAAATGACTGTACCCGAATAAGAAGGTCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGAACTAGCGTAGTTCGGAATTACTGGGCTTAAAGAGTTCGTAGGTGGTTAAAAAAGTTGATGGTGAAATCCCAAGGCTCAACCTTGGAACT
+SEQ_LEN: 249
+SCORES: [^^^aL[L^[aaaaaeeeZ]bdddbbZdeeg\dfad\bdegc_bcbd]J]Tb\ea`d`cgedggggggdbbf\bc\bbe\cb\cc`bddTYcddddbadbdbR^RZ^aY_bdddbddb^bb^^^^d^b```d^`bdddddddd^^^^`ZHYY`b`dd^d`IWYbddFHOW`dbd^ddd^Y^^YY`bdI^I^IY`NYIWW`^`^bb`dY^bIIS`NY`dbYYINON^YY^IIOMHIYWYNNNYYINY^Y^
+---
+SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:17246:2253 2:N:0:14
+SEQ: CCTCTTCGCTACCCATGCTTTCGTTCCTCAGTGTCAGTAATGATCCAGAAAGTTGCCTTCGCTTTTGATGTTCTTTCTAATATCTACGAATTTCACCTCTACACTAGAAATTCCACTTTCCTCTATCATACTCTAGCTAAAAAGTTTTGATGGCAGTTCCAAGGTTGAGCCTTGGGATTTCACCATCAACTTTTTTAACCACCTACGAACTCTTTAAGCCCAGTAATTCCGAACTACGCTAGGTCCCTTC
+SEQ_LEN: 250
+SCORES: ^^^^^aa^^aacaaaaaeeeeegeghheeacO`OXbfeff^Obccfgcfeggfdefgghhgd_beggJ`dfgeghhggbdegggfcggghhgghgaffggcfeggggaafeeccecegebeeg^MbbeeggggeeeeeeccaedccddddedMSK^a`\\`\\IT\`KaaK`\b``bddeddeI`ddbOI`dddbZbPOIIOWO^^HWWF`bdb``YYYYIW^bY^deYY^`HQ`YIHFMWS```O^dd`
+---
+SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:13072:2276 1:N:0:14
+SEQ: GGGAATTTTGCGCAATGGGCGAAAGCCTGACGCAGCAACGCCGCGGGATCGAAGAAGCTCTGCGGAGTGTAAAGATCTGTCATAAGGGAAGAATAACGAGTATTCTAACAAAATATTCGTCTGACGGTACCTTATAAGAAAGCCACGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAGGGGGGCAAGCGTTATCCGGAATCATTGGGCGTAAAGGGGTCGTATGAGGACTGATCAG
+SEQ_LEN: 239
+SCORES: ^^^^^a^aa[LT_abXbeea]Jb]b]d^_a\]K]T]edK]VV]bdH[[Ybc\_cdegccabeeddWY\_Kac\KRZadddd^Zabbdbbbd^aZ^aRY``WW^YIIYb```WWYYYYY^^WIH`bHMW^HIY^^^YO^bd``dWIISZWZ``Y^^YWY^^W^ddY`b^ZSQMHS^IYYWHMFFFMMFMWbW`HW``dY`Z^FOY^b`dd^WFFS`W^IWFOHFFWIOINYbWYbdb^YY
+---
+SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:13072:2276 2:N:0:14
+SEQ: GTTTGCTCCCCACGCTTTCGTTCCTCAGCGTCAGTATAGGCCCAGTAAGCTGCCTTCGCCTTTGATGTTCCTCCTGATATCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTACCTCACTCAAGACTGACAGTATTGAAACCGTTCCCCCGGTTAAGCCGCGGTCTTTTAATTCCAACTGATCAGT
+SEQ_LEN: 195
+SCORES: [[[]]LTL_____bdddddd``bdN`]bLV_VbdXXX`MX`dddJb\beec_ac_\dJXbT]d`bb\`Tb`_dc]bdccdddccccdXccddcccccbbdcd_cXXcccXXZXXPcIR_XIQIO_ZWWIOIIX____ZIWVIZ_WZGNZUXFLNNNUGWFQLSUZUGUFFFMGFNUGGNNMMUUUUGUU[[Z[d[
+---

diff --git a/bp_test/out/assemble_pairs.out.1 b/bp_test/out/assemble_pairs.out.1
new file mode 100644 (file)
index 0000000..1e92ed0
--- /dev/null
+++ b/bp_test/out/assemble_pairs.out.1
@@ -0,0 +1,25 @@
+SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:14862:1868:14
+SEQ: TGGGGAATATTGGACAATGGGGGCAACCCTGATCCAGCAATACCGCGTGTGTGAAGAAGGCCTGAGGGTTGTAAAGCACTTTCAATTGTGAAGAAAAGTTAACGGTTAATAACCGTTAGCCTTGACGTTAACTTTAGAAGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGTAGGCGGTTTATTAAGTCAGATGTGAAAGCCCCGGGCTTAACCTGGGAACTGCATTTGAAACTGGTCAACTAGAGTATGGTAGAGGAAAGTGGAATTTCTGGTGTAGCGGTGAAATGCGTAGATATCAGAAGGAACATCAATGGCGAAGGCAGCTTTCTGGACCAATACTGACGCTGAGGTACGAAAGCGTGGGTAGCAAACAGG
+SEQ_LEN: 429
+SCORES: [^^^^^^accccccccfffffffgghhhdghggeffgeggfgeggcgdgdgge`eefeegeggeegggdeddggggggggggggeeegeggggggggggggfacdffffffffffffffffdfdfffffbdffffdbbdbdddbfff[`cfbfffdffdfffffdfbdW]Q]cb[dddffb^[cfbbbdbYb^bbdffffXXHPIPI]MMWNNHDHOIYYVFHOMHPSFHQMSW`X\@]^[Y`IX\_XX``ZSFWcW^YYY`^PIH\KK\\db\\KK`beb``dab\`debdadcacddcdc\dcc\^aeaecea]cee_eeegggggggggfffccggggegcghgggghhhhhggefbeeggd]ddcef^ghgfeffeeeee^bcbd^XedgcggfdZeZhgeegeeeddeccccca[L[aa^^^^^
+---
+SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:13906:2139:14
+SEQ: TAGGGAATCTTGCACAATGGAGGAAACTCTGATGCAGCGATGCCGCGTGAGTGAAGAAGGCCTTTGGGTTGTAAAGCTCTTTCGTCGGGGAAGAAAATGACTGTACCCGAATAAGAAGGTCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGACCTAGCGTAGTTCGGAATTACTGGGCTTAAAGAGTTCGTAGGTGGTTAAAAAAGTTGGTGGTGAAATCCCAGAGCTTAACTCTGGAACTGCCATCAAAACTTTTTAGCTAGAGTATGATAGAGGAAAGCAGAATTTCTAGTGTAGAGGTGAAATTCGTAGATATTAGAAAGAATACCGATTGCGAAGGCAGCTTTCTGGATCATTACTGACGCTGAGGAACGAAAGCATGGGTAGCGAAGA
+SEQ_LEN: 402
+SCORES: [^^^X^aaacaccacceeeeeeggghegegghggeggggdccdfgggbdgd^degefgegeghghhhgbdbdgggheghhhgfgeggggggddeeeeeddeeedeeedddddeeeeeeebdeaddcdeeeeeededeeddeeeecccc`^dddee]Y_YI^VMHMSHPIIZ\WYa`^[I]PWI]^]W_a`Y\Y]WXH\`aa_WXPIYaZY]`_@MOX\WUOFMHVXI]a]I]I]^IY][SI@MMZ\_`][X`\`ddbbddddca\eededddcdeeeaeeeee^Mgecacc^eegegeeegeeeggffffbae`gghgegggfbffhhhgggfdT]geacd_d_cfgggeeeghggeefecbO^d^egdgdghhggeghgegeeeeeeccaca`cc^aa^^[
+---
+SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:14865:2158:14
+SEQ: TAGGGAATCTTGCACAATGGAGGAAACTCTGATGCAGCGATGCCGCGTGAGTGAAGAAGGCCTTTGGGTTGTAAAGCTCTTTCGTCGGGGAAGAAAATGACTGTACCCGAATAAGAAGGTCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGACCTAGCGTAGTTCGGAATTACTGGGCTTAAAGAGTTCGTAGGTGGTTAAAAAAGTTGGTGGTGAAATCCCAGAGCTTAACTCTGGAACTGCCATCAAAACTTTTTAGCTAGAGTATGATAGAGGAAAGCAGAATTTCTAGTGTAGAGGTGAAATTCGTAGATATTAGAAAGAATACCGATTGCGAAGGCAGCTTTCTGGATCATTACTGACACTGAGGAACGAAAGCATGGGTAGCGAAG
+SEQ_LEN: 401
+SCORES: ^^^^^aaaaaccaccaeeeeeedbgegegegfggefc^]begggggg]cddeeeeceege_eggghegddggghhggghghgggcdggggeddeee^eddddeddeeddY]bddedeeeadddddcdedYY`dY^`dbdede^`]ZcWWZbddd_YYION__]_WY_VO[SLHX_`]X_^YOOWIY^Y__`aY`\XI\^W]^]VIONIY_`^XI\X^^YVIUVHXIVNY]IYXWIIPIIPP[\X_]`_Y\bbZddddddcddccZ\cea^eeceeea^b\eeee^ggecc_Mcbeggegggfeggeggfdbaeeede^bgefd`^^ggghgggeb]d_ccdccegggcgffead^b\ee^bb^\e^bge`XbOfageegeZgeee^eeaaaaa^aa^a^^[
+---
+SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:17246:2253:14
+SEQ: AGGGAATCTTGCACAATGGGGGAAACCCTGATGCAGCGATGCCGCGTGAGTGAAGAAGGCCCTTGGGTTGTAAAGCTCTTTCGTCGGGGAAGAAAATGACTGTACCCGAATAAGAAGGTCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGACCTAGCGTAGTTCGGAATTACTGGGCTTAAAGAGTTCGTAGGTGGTTAAAAAAGTTGATGGTGAAATCCCAAGGCTCAACCTTGGAACTGCCATCAAAACTTTTTAGCTAGAGTATGATAGAGGAAAGTGGAATTTCTAGTGTAGAGGTGAAATTCGTAGATATTAGAAAGAACATCAAAAGCGAAGGCAACTTTCTGGATCATTACTGACACTGAGGAACGAAAGCATGGGTAGCGAAGAGG
+SEQ_LEN: 403
+SCORES: [^^^aL[L^[aaaaaeeeZ]bdddbbZdeeg\dfad\bdegc_bcbd]J]Tb\ea`d`cgedggggggdbbf\bc\bbe\cb\cc`bddTYcddddbadbdbR^RZ^aY_bdddbddb^bb^^^^d^b```d^`bdddddddd^^^^`ZHYY`^_a]O_]@RUMFHEHOPH_]YXaa]XX[VIVXXYI\I]IXFNUFVVOVOIIOP`V]`IISILX_a^IYINON]XX\IIOIHIKVWMHNWXINX\XKSMdeddddccdeacceeeeeeggggeebbM^geebegececceefaaggggefcggffaghgghhgggcfgggedbgghhgegfd`Jggeb_dghhggfedfggefcgfccbO^ffefbXO`Ocaeehhgegeeeeeaaaaacaa^^aa^^^^^
+---
+SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:13072:2276:14
+SEQ: GGGAATTTTGCGCAATGGGCGAAAGCCTGACGCAGCAACGCCGCGGGATCGAAGAAGCTCTGCGGAGTGTAAAGATCTGTCATAAGGGAAGAATAACGAGTATTCTAACAAAATATTCGTCTGACGGTACCTTATAAGAAAGCCACGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAGGGGGGCAAGCGTTATCCGGAATCATTGGGCGTAAAGGGGTCGTATGAGGACTGATCAGTTGGAATTAAAAGACCGCGGCTTAACCGGGGGAACGGTTTCAATACTGTCAGTCTTGAGTGAGGTAGAGGTAAGCGGAATTCCTGGTGTAGCGGTGAAATGCGTAGATATCAGGAGGAACATCAAAGGCGAAGGCAGCTTACTGGGCCTATACTGACGCTGAGGAACGAAAGCGTGGGGAGCAAAC
+SEQ_LEN: 425
+SCORES: ^^^^^a^aa[LT_abXbeea]Jb]b]d^_a\]K]T]edK]VV]bdH[[Ybc\_cdegccabeeddWY\_Kac\KRZadddd^Zabbdbbbd^aZ^aRY``WW^YIIYb```WWYYYYY^^WIH`bHMW^HIY^^^YO^bd``dWIISZWZ``Y^^YWY^^W^ddY`b^ZSQMHS^IYYWHMFFFMMFMWbW`HW``dY`Z^FOY^b`dd^WFFS`W^IWFOHFFWIOINYZWWYZZTTGUUUUMMNNGGUNFGMFFFUGUZUSLQFWGUNNNLFXUZNGZW_ZIVWIZ____XIIOIWWZ_OIQIX_RIcPXXZXXcccXXc_dcdbbcccccddccXdccccdddccdb]cd_`bT`\bb`d]TbXJd\_ca_ceeb\bJddd`XM`XXXdbV_VLb]`Ndb``ddddddb_____LTL]][[[
+---

diff --git a/bp_test/out/assemble_pairs.out.2 b/bp_test/out/assemble_pairs.out.2
new file mode 100644 (file)
index 0000000..ee642cb
--- /dev/null
+++ b/bp_test/out/assemble_pairs.out.2
@@ -0,0 +1,15 @@
+SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:13906:2139:14
+SEQ: TAGGGAATCTTGCACAATGGAGGAAACTCTGATGCAGCGATGCCGCGTGAGTGAAGAAGGCCTTTGGGTTGTAAAGCTCTTTCGTCGGGGAAGAAAATGACTGTACCCGAATAAGAAGGTCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGACCTAGCGTAGTTCGGAATTACTGGGCTTAAAGAGTTCGTAGGTGGTTAAAAAAGTTGGTGGTGAAATCCCAGAGCTTAACTCTGGAACTGCCATCAAAACTTTTTAGCTAGAGTATGATAGAGGAAAGCAGAATTTCTAGTGTAGAGGTGAAATTCGTAGATATTAGAAAGAATACCGATTGCGAAGGCAGCTTTCTGGATCATTACTGACGCTGAGGAACGAAAGCATGGGTAGCGAAGA
+SEQ_LEN: 402
+SCORES: [^^^X^aaacaccacceeeeeeggghegegghggeggggdccdfgggbdgd^degefgegeghghhhgbdbdgggheghhhgfgeggggggddeeeeeddeeedeeedddddeeeeeeebdeaddcdeeeeeededeeddeeeecccc`^dddee]Y_YI^VMHMSHPIIZ\WYa`^[I]PWI]^]W_a`Y\Y]WXH\`aa_WXPIYaZY]`_@MOX\WUOFMHVXI]a]I]I]^IY][SI@MMZ\_`][X`\`ddbbddddca\eededddcdeeeaeeeee^Mgecacc^eegegeeegeeeggffffbae`gghgegggfbffhhhgggfdT]geacd_d_cfgggeeeghggeefecbO^d^egdgdghhggeghgegeeeeeeccaca`cc^aa^^[
+---
+SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:14865:2158:14
+SEQ: TAGGGAATCTTGCACAATGGAGGAAACTCTGATGCAGCGATGCCGCGTGAGTGAAGAAGGCCTTTGGGTTGTAAAGCTCTTTCGTCGGGGAAGAAAATGACTGTACCCGAATAAGAAGGTCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGACCTAGCGTAGTTCGGAATTACTGGGCTTAAAGAGTTCGTAGGTGGTTAAAAAAGTTGGTGGTGAAATCCCAGAGCTTAACTCTGGAACTGCCATCAAAACTTTTTAGCTAGAGTATGATAGAGGAAAGCAGAATTTCTAGTGTAGAGGTGAAATTCGTAGATATTAGAAAGAATACCGATTGCGAAGGCAGCTTTCTGGATCATTACTGACACTGAGGAACGAAAGCATGGGTAGCGAAG
+SEQ_LEN: 401
+SCORES: ^^^^^aaaaaccaccaeeeeeedbgegegegfggefc^]begggggg]cddeeeeceege_eggghegddggghhggghghgggcdggggeddeee^eddddeddeeddY]bddedeeeadddddcdedYY`dY^`dbdede^`]ZcWWZbddd_YYION__]_WY_VO[SLHX_`]X_^YOOWIY^Y__`aY`\XI\^W]^]VIONIY_`^XI\X^^YVIUVHXIVNY]IYXWIIPIIPP[\X_]`_Y\bbZddddddcddccZ\cea^eeceeea^b\eeee^ggecc_Mcbeggegggfeggeggfdbaeeede^bgefd`^^ggghgggeb]d_ccdccegggcgffead^b\ee^bb^\e^bge`XbOfageegeZgeee^eeaaaaa^aa^a^^[
+---
+SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:17246:2253:14
+SEQ: AGGGAATCTTGCACAATGGGGGAAACCCTGATGCAGCGATGCCGCGTGAGTGAAGAAGGCCCTTGGGTTGTAAAGCTCTTTCGTCGGGGAAGAAAATGACTGTACCCGAATAAGAAGGTCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGACCTAGCGTAGTTCGGAATTACTGGGCTTAAAGAGTTCGTAGGTGGTTAAAAAAGTTGATGGTGAAATCCCAAGGCTCAACCTTGGAACTGCCATCAAAACTTTTTAGCTAGAGTATGATAGAGGAAAGTGGAATTTCTAGTGTAGAGGTGAAATTCGTAGATATTAGAAAGAACATCAAAAGCGAAGGCAACTTTCTGGATCATTACTGACACTGAGGAACGAAAGCATGGGTAGCGAAGAGG
+SEQ_LEN: 403
+SCORES: [^^^aL[L^[aaaaaeeeZ]bdddbbZdeeg\dfad\bdegc_bcbd]J]Tb\ea`d`cgedggggggdbbf\bc\bbe\cb\cc`bddTYcddddbadbdbR^RZ^aY_bdddbddb^bb^^^^d^b```d^`bdddddddd^^^^`ZHYY`^_a]O_]@RUMFHEHOPH_]YXaa]XX[VIVXXYI\I]IXFNUFVVOVOIIOP`V]`IISILX_a^IYINON]XX\IIOIHIKVWMHNWXINX\XKSMdeddddccdeacceeeeeeggggeebbM^geebegececceefaaggggefcggffaghgghhgggcfgggedbgghhgegfd`Jggeb_dghhggfedfggefcgfccbO^ffefbXO`Ocaeehhgegeeeeeaaaaacaa^^aa^^^^^
+---

diff --git a/bp_test/test/test_assemble_pairs b/bp_test/test/test_assemble_pairs
new file mode 100755 (executable)
index 0000000..37b1f00
--- /dev/null
+++ b/bp_test/test/test_assemble_pairs
@@ -0,0 +1,11 @@
+#!/bin/bash
+
+source "$BP_DIR/bp_test/lib/test.sh"
+
+run "$bp -I $in -O $tmp"
+assert_no_diff $tmp $out.1
+clean
+
+run "$bp -o 70 -I $in -O $tmp"
+assert_no_diff $tmp $out.2
+clean