]> git.donarmstrong.com Git - biopieces.git/blob - bp_test/in/assemble_pairs.in
added tests for assemble_pairs biopiece
[biopieces.git] / bp_test / in / assemble_pairs.in
1 SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:14862:1868 1:N:0:14
2 SEQ: TGGGGAATATTGGACAATGGGGGCAACCCTGATCCAGCAATACCGCGTGTGTGAAGAAGGCCTGAGGGTTGTAAAGCACTTTCAATTGTGAAGAAAAGTTAACGGTTAATAACCGTTAGCCTTGACGTTAACTTTAGAAGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGTAGGCGGTTTATTCAGTCAGATGTG
3 SEQ_LEN: 249
4 SCORES: [^^^^^^accccccccfffffffgghhhdghggeffgeggfgeggcgdgdgge`eefeegeggeegggdeddggggggggggggeeegeggggggggggggfacdffffffffffffffffdfdfffffbdffffdbbdbdddbfff[`cfbfffdffdfffffdfbdW]Q]cb[dddffb^[cfbbbdbYb^bbdffffbbH^dfddY^bWSMFWOIYbW^b]^^QbdQQMSWbY^Ibb^YbIY^b^b
5 ---
6 SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:14862:1868 2:N:0:14
7 SEQ: CCTGTTTGCTACCCACGCTTTCGTACCTCAGCGTCAGTATTGGTCCAGAAAGCTGCCTTCGCCATTGATGTTCCTTCTGATATCTACGCATTTCACCGCTACACCAGAAATTCCACTTTCCTCTACCATACTCTAGTTGACCAGTTTCAAATGCAGTTCCCAGGTTAAGCCCGGGGCTTTCACATCTGACTTAATAAACCGCCTACGCACGCTTTACGCCCAGTAATTC
8 SEQ_LEN: 229
9 SCORES: ^^^^^aa[L[accccceddeeegeeghZeZdfggcgdeX^dbcb^eeeeeffefghg^fecdd]dggeebfegghhhhhgggghgcgeggggccfffgggggggggeee_eec]aeceaea^\ccd\cdcddcacdadbed`\bad``beb`KK\\bd\\KK\HIP^`YYY^WcWFSZ``YYb`bddd^`^``bddddbIFSWHMOHF`Zc^`HHIPOWMM^IPIPYYY
10 ---
11 SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:13906:2139 1:N:0:14
12 SEQ: TAGGGAATCTTGCACAATGGAGGAAACTCTGATGCAGCGATGCCGCGTGAGTGAAGAAGGCCTTTGGGTTGTAAAGCTCTTTCGTCGGGGAAGAAAATGACTGTACCCGAATAAGAAGGTCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGACCTAGCGTAGTTCGGAATTACTGGGCTTAAAGAGTTCGTAGGTGGTTAAAAACGTTGGTGGTGAAATCCCAGAGCTTAACGCTGGAACTG
13 SEQ_LEN: 251
14 SCORES: [^^^X^aaacaccacceeeeeeggghegegghggeggggdccdfgggbdgd^degefgegeghghhhgbdbdgggheghhhgfgeggggggddeeeeeddeeedeeedddddeeeeeeebdeaddcdeeeeeededeeddeeeecccc`^dddeedddcdb`dd^Y`c``]`ddec`^bddeY^b`Wdddd`dddY``bdeedbdddd^Y^b`HMOY`dWWHMOYYbdddddb^`IY``YIHMM^]`ddeY
15 ---
16 SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:13906:2139 2:N:0:14
17 SEQ: TCTTCGCTACCCATGCTTTCGTTCCTCAGCGTCAGTAATGATCCAGAAAGCTGCCTTCGCAATCGGTATTCTTTCTAATATCTACGAATTTCACCTCTACACTAGAAATTCTGCTTTCCTCTATCATACTCTAGCTAAAAAGTTTTGATGGCAGTTCCAGAGTTAAGCTCTGGGATTTCACCACCAACTTTTTTAACCACCTACGAACTCTTTAAGCCCAGTAATTCCGAACTACGCTAGGTCCCTT
18 SEQ_LEN: 247
19 SCORES: [^^aa^cc`acacceeeeeegeghgegghhgdgdge^d^Obcefeegghgeeegggfc_d_dcaeg]Tdfggghhhffbfgggeghgg`eabffffggeeegeeegegee^ccacegM^eeeeeaeeedcdddedee\acddddbbdd`\`a\^bdb\`bK[T\adYbdI^I^d^I^YIYIPYW^`^`ddedd]dYIPYW`ddd^H^W^Y^Ybd`d``dIWP^I^bddYW^^IIPHTMHMW`IY`Y^
20 ---
21 SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:14865:2158 1:N:0:14
22 SEQ: TAGGGAATCTTGCACAATGGAGGAAACTCTGATGCAGCGATGCCGCGTGAGTGAAGAAGGCCTTTGGGTTGTAAAGCTCTTTCGTCGGGGAAGAAAATGACTGTACCCGAATAAGAAGGTCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGACCTAGCGTAGTTCGGAATTACTGGGCTTAAAGAGTTCGTAGGTGGTTAAAAAAGTTGGTGGTGAAATCCCAGAGCTTAACTCTGGAACT
23 SEQ_LEN: 250
24 SCORES: ^^^^^aaaaaccaccaeeeeeedbgegegegfggefc^]begggggg]cddeeeeceege_eggghegddggghhggghghgggcdggggeddeee^eddddeddeeddY]bddedeeeadddddcdedYY`dY^`dbdede^`]ZcWWZbdddded`Z`dbdddbdZO^]OY``c``dbdeedddbd``bdYb`YI^bW^bdYYbdW`bb`YS^Y`bYWWWWHYIY^d`IYYWIIPIIPP^^Yd^b`Y^
25 ---
26 SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:14865:2158 2:N:0:14
27 SEQ: CTTCGCTACCCATGCTTTCGTTCCTCAGTGTCAGTAATGATCCAGAAAGCTGCCTTCGCAATCGGTATTCTTTCTAATATCTACGAATTTCACCTCTACACTAGAAATTCTGCTTTCCTCTATCATACTCTAGCTAAAAAGTTTTGATGGCAGTTCCAGAGTTAAGCTCTGGGATTTCACCACCAACTTTTTTAACCACCTACGAACTCTTTAAGCCCAGTAATTCCGAACTACGCTAGGTCCCTTC
28 SEQ_LEN: 247
29 SCORES: [^^a^aa^aaaaaee^eeegZegeegafObX`egb^e\^bb^ee\b^daeffgcgggeccdcc_d]beggghggg^^`dfegb^edeeeabdfggeggefgggeggebcM_ccegg^eeee\b^aeeecee^aec\ZccddcddddddZbbadddda^a^^a^b^aZd^da`YNY`b^`YI^d`b``I^bdbZINOIY^`bb``^b^ddddddY`YIWOOY``Y`ddYHOS^^Y`ZW`^b`NOIYY`
30 ---
31 SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:17246:2253 1:N:0:14
32 SEQ: AGGGAATCTTGCACAATGGGGGAAACCCTGATGCAGCGATGCCGCGTGAGTGAAGAAGGCCCTTGGGTTGTAAAGCTCTTTCGTCGGGGAAGAAAATGACTGTACCCGAATAAGAAGGTCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGAACTAGCGTAGTTCGGAATTACTGGGCTTAAAGAGTTCGTAGGTGGTTAAAAAAGTTGATGGTGAAATCCCAAGGCTCAACCTTGGAACT
33 SEQ_LEN: 249
34 SCORES: [^^^aL[L^[aaaaaeeeZ]bdddbbZdeeg\dfad\bdegc_bcbd]J]Tb\ea`d`cgedggggggdbbf\bc\bbe\cb\cc`bddTYcddddbadbdbR^RZ^aY_bdddbddb^bb^^^^d^b```d^`bdddddddd^^^^`ZHYY`b`dd^d`IWYbddFHOW`dbd^ddd^Y^^YY`bdI^I^IY`NYIWW`^`^bb`dY^bIIS`NY`dbYYINON^YY^IIOMHIYWYNNNYYINY^Y^
35 ---
36 SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:17246:2253 2:N:0:14
37 SEQ: CCTCTTCGCTACCCATGCTTTCGTTCCTCAGTGTCAGTAATGATCCAGAAAGTTGCCTTCGCTTTTGATGTTCTTTCTAATATCTACGAATTTCACCTCTACACTAGAAATTCCACTTTCCTCTATCATACTCTAGCTAAAAAGTTTTGATGGCAGTTCCAAGGTTGAGCCTTGGGATTTCACCATCAACTTTTTTAACCACCTACGAACTCTTTAAGCCCAGTAATTCCGAACTACGCTAGGTCCCTTC
38 SEQ_LEN: 250
39 SCORES: ^^^^^aa^^aacaaaaaeeeeegeghheeacO`OXbfeff^Obccfgcfeggfdefgghhgd_beggJ`dfgeghhggbdegggfcggghhgghgaffggcfeggggaafeeccecegebeeg^MbbeeggggeeeeeeccaedccddddedMSK^a`\\`\\IT\`KaaK`\b``bddeddeI`ddbOI`dddbZbPOIIOWO^^HWWF`bdb``YYYYIW^bY^deYY^`HQ`YIHFMWS```O^dd`
40 ---
41 SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:13072:2276 1:N:0:14
42 SEQ: GGGAATTTTGCGCAATGGGCGAAAGCCTGACGCAGCAACGCCGCGGGATCGAAGAAGCTCTGCGGAGTGTAAAGATCTGTCATAAGGGAAGAATAACGAGTATTCTAACAAAATATTCGTCTGACGGTACCTTATAAGAAAGCCACGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAGGGGGGCAAGCGTTATCCGGAATCATTGGGCGTAAAGGGGTCGTATGAGGACTGATCAG
43 SEQ_LEN: 239
44 SCORES: ^^^^^a^aa[LT_abXbeea]Jb]b]d^_a\]K]T]edK]VV]bdH[[Ybc\_cdegccabeeddWY\_Kac\KRZadddd^Zabbdbbbd^aZ^aRY``WW^YIIYb```WWYYYYY^^WIH`bHMW^HIY^^^YO^bd``dWIISZWZ``Y^^YWY^^W^ddY`b^ZSQMHS^IYYWHMFFFMMFMWbW`HW``dY`Z^FOY^b`dd^WFFS`W^IWFOHFFWIOINYbWYbdb^YY
45 ---
46 SEQ_NAME: M01168:16:000000000-A1R9L:1:1101:13072:2276 2:N:0:14
47 SEQ: GTTTGCTCCCCACGCTTTCGTTCCTCAGCGTCAGTATAGGCCCAGTAAGCTGCCTTCGCCTTTGATGTTCCTCCTGATATCTACGCATTTCACCGCTACACCAGGAATTCCGCTTACCTCTACCTCACTCAAGACTGACAGTATTGAAACCGTTCCCCCGGTTAAGCCGCGGTCTTTTAATTCCAACTGATCAGT
48 SEQ_LEN: 195
49 SCORES: [[[]]LTL_____bdddddd``bdN`]bLV_VbdXXX`MX`dddJb\beec_ac_\dJXbT]d`bb\`Tb`_dc]bdccdddccccdXccddcccccbbdcd_cXXcccXXZXXPcIR_XIQIO_ZWWIOIIX____ZIWVIZ_WZGNZUXFLNNNUGWFQLSUZUGUFFFMGFNUGGNNMMUUUUGUU[[Z[d[
50 ---