paralellized phylo.diversity

[mothur.git] / venncommand.h

diff --git a/venncommand.h b/venncommand.h
index 3671350072afff05cf0816e66ce649182b00d258..f6bdf395e20eeba3af9c7c7b4bba206daa9ebe56 100644 (file)
--- a/venncommand.h
+++ b/venncommand.h
@@ -37,21 +37,21 @@ private:
        vector<Calculator*> vennCalculators;    
        ValidCalculators* validCalculator;
        vector<SharedRAbundVector*> lookup;
+       set< set<int> > combosOfFour;
        SAbundVector* sabund;
        int abund;
        
-       OptionParser* parser;
-       map<string, string> parameters;
-       map<string, string>::iterator it;
-       bool abort, allLines;
-       set<int> lines; //hold lines to be used
+       bool abort, allLines, nseqs, perm;
        set<string> labels; //holds labels to be used
-       string format, groups, calc, line, label;
+       string format, groups, calc, label, outputDir;
        vector<string> Estimators, Groups;
+       
+       set< set<int> > findCombinations(int);
+       int getCombos(set<int>, set< set<int> >&);
 
 
 };
 
 
 
-#endif
\ No newline at end of file
+#endif