ValidParameters::ValidParameters() {
try {
- parameters["phylipfile"] = "phylipfile";
- parameters["columnfile"] = "columnfile";
- parameters["listfile"] = "listfile";
- parameters["rabundfile"] = "rabundfile";
- parameters["sabundfile"] = "sabundfile";
- parameters["namefile"] = "namefile";
- parameters["groupfile"] = "groupfile";
- parameters["orderfile"] = "orderfile";
+ parameters["phylip"] = "phylip";
+ parameters["column"] = "column";
+ parameters["list"] = "list";
+ parameters["rabund"] = "rabund";
+ parameters["sabund"] = "sabund";
+ parameters["name"] = "name";
+ parameters["group"] = "group";
+ parameters["order"] = "order";
+ parameters["fasta"] = "fasta";
+ parameters["tree"] = "tree";
parameters["fileroot"] = "fileroot";
parameters["cutoff"] = "cutoff";
parameters["method"] = "method";
parameters["shared"] = "shared";
parameters["summary"] = "summary";
parameters["sharedsummary"] = "sharedsummary";
-
+ parameters["random"] = "random";
+ parameters["groups"] = "groups";
+ parameters["calc"] = "calc";
+
}
catch(exception& e) {
cout << "Standard Error: " << e.what() << " has occurred in the ValidParameters class Function ValidParameters. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
if ((parameters.find(parameter)) != (parameters.end())) {
return true;
}else{
- cout << parameter << " is not a valid parameter in Mothur." << endl;
+ cout << parameter << " is not a valid parameter in Mothur. Valid parameters are " << endl;
+ for (it = parameters.begin(); it != parameters.end(); it++) {
+ cout << it->first << ", ";
+ }
+ cout << endl;
+
return false;
}
}
}
-/***********************************************************************/
\ No newline at end of file
+/***********************************************************************/