5 * Created by Sarah Westcott on 1/5/09.
6 * Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
10 #include "validparameter.h"
12 /***********************************************************************/
14 ValidParameters::ValidParameters() {
17 parameters["phylipfile"] = "phylipfile";
18 parameters["columnfile"] = "columnfile";
19 parameters["listfile"] = "listfile";
20 parameters["rabundfile"] = "rabundfile";
21 parameters["sabundfile"] = "sabundfile";
22 parameters["namefile"] = "namefile";
23 parameters["groupfile"] = "groupfile";
24 parameters["orderfile"] = "orderfile";
25 parameters["fileroot"] = "fileroot";
26 parameters["cutoff"] = "cutoff";
27 parameters["method"] = "method";
28 parameters["format"] = "format";
29 parameters["precision"] = "precision";
30 parameters["label"] = "label";
31 parameters["line"] = "line";
32 parameters["iters"] = "iters";
33 parameters["jumble"] = "jumble";
34 parameters["freq"] = "freq";
35 parameters["single"] = "single";
36 parameters["rarefaction"] = "rarefaction";
37 parameters["sharedrarefaction"] = "sharedrarefaction";
38 parameters["shared"] = "shared";
39 parameters["summary"] = "summary";
40 parameters["sharedsummary"] = "sharedsummary";
44 cout << "Standard Error: " << e.what() << " has occurred in the ValidParameters class Function ValidParameters. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
48 cout << "An unknown error has occurred in the ValidParameters class function ValidParameters. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
53 /***********************************************************************/
55 ValidParameters::~ValidParameters() {}
57 /***********************************************************************/
58 bool ValidParameters::isValidParameter(string parameter) {
61 //is the parameter in the map
62 if ((parameters.find(parameter)) != (parameters.end())) {
65 cout << parameter << " is not a valid parameter in Mothur." << endl;
71 cout << "Standard Error: " << e.what() << " has occurred in the ValidParameters class Function isValidParameter. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
75 cout << "An unknown error has occurred in the ValidParameters class function isValidParameter. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
80 /***********************************************************************/