if(qThreshold != 0) { success = stripQualThreshold(currSeq, qFile); }
else if(qAverage != 0) { success = cullQualAverage(currSeq, qFile); }
if(!success) { trashCode += 'q'; }
+ qFile.close();
}
if(barcodes.size() != 0){
success = stripBarcode(currSeq, group);
}
}
+ inOligos.close();
+
numFPrimers = forPrimer.size();
numRPrimers = revPrimer.size();
}