added set.dir command and modified commands to redirect input and output, removed...

[mothur.git] / summarycommand.h

diff --git a/summarycommand.h b/summarycommand.h
index 6ee8c4a522d517b563318d92b840f708b20603e5..6f04fc721ad109545aa899b0a85871982bdc3c80 100644 (file)
--- a/summarycommand.h
+++ b/summarycommand.h
@@ -33,14 +33,17 @@ private:
        InputData* input;
        ValidCalculators* validCalculator;
        SAbundVector* sabund;
-       string outputFileName;
-       ofstream outputFileHandle;
        int abund, size;
 
        bool abort, allLines;
        set<string> labels; //holds labels to be used
-       string label, calc;
+       string label, calc, outputDir;
        vector<string>  Estimators;
+       vector<string> inputFileNames;
+       vector<string> groups;
+       
+       vector<string> parseSharedFile(string);
+
 
 };
 #endif