finished sub.sample command

[mothur.git] / subsamplecommand.h

diff --git a/subsamplecommand.h b/subsamplecommand.h
index f068ac32eb975f6fa246fe654d84f56db0e33c3a..b70050653fd5ded5a9b25b555efea08ae79b9565 100644 (file)
--- a/subsamplecommand.h
+++ b/subsamplecommand.h
@@ -41,10 +41,21 @@ private:
        vector<string> Groups, outputNames;
        map<string, vector<string> > outputTypes;
        int size;
+       vector<string> names;
+       map<string, vector<string> > nameMap;
        
        int eliminateZeroOTUS(vector<SharedRAbundVector*>&);
        int getSubSampleShared();
+       int getSubSampleList();
+       int getSubSampleRabund();
+       int getSubSampleSabund();
+       int getSubSampleFasta();
        int processShared(vector<SharedRAbundVector*>&, ofstream&);
+       int processRabund(RAbundVector*&, ofstream&);
+       int processSabund(SAbundVector*&, ofstream&);
+       int processList(ListVector*&, ofstream&, set<string>&);
+       int getNames();
+       int readNames();
        
 };