reimplemented smith-waterman

[fastq-tools.git] / src / swsse2 / swwozniak.h

diff --git a/src/swsse2/swwozniak.h b/src/swsse2/swwozniak.h
deleted file mode 100644 (file)
index 6c5ed4c..0000000
--- a/src/swsse2/swwozniak.h
+++ /dev/null
@@ -1,40 +0,0 @@
-/******************************************************************\r
-  Copyright 2006 by Michael Farrar.  All rights reserved.\r
-  This program may not be sold or incorporated into a commercial product,\r
-  in whole or in part, without written consent of Michael Farrar.  For \r
-  further information regarding permission for use or reproduction, please \r
-  contact: Michael Farrar at farrar.michael@gmail.com.\r
-*******************************************************************/\r
-\r
-/*\r
-  Written by Michael Farrar, 2006.\r
-  Please send bug reports and/or suggestions to farrar.michael@gmail.com.\r
-*/\r
-\r
-#ifndef INCLUDE_SWWOZNIAK_H\r
-#define INCLUDE_SWWOZNIAK_H\r
-\r
-#include "swsse2.h"\r
-#include "fastalib.h"\r
-\r
-#define MATRIX_ROW_SIZE 32\r
-\r
-SW_DATA *\r
-swWozniakInit (unsigned char   *querySeq,\r
-               int              queryLength,\r
-               signed char     *matrix);\r
-\r
-\r
-void \r
-swWozniakScan (unsigned char   *querySeq,\r
-               int              queryLength,\r
-               FASTA_LIB       *dbLib,\r
-               void            *swData,\r
-               SEARCH_OPTIONS  *options,\r
-               SCORE_LIST      *scores);\r
-\r
-void\r
-swWozniakComplete (SW_DATA *pSwData);\r
-\r
-\r
-#endif /* INCLUDE_SWWOZNIAK_H */\r