reimplemented smith-waterman

[fastq-tools.git] / src / Makefile.am

diff --git a/src/Makefile.am b/src/Makefile.am
index 202e6c2adf1375cbb2dd08b699d0ff970d446edc..e28add9e4424a0a95ecc08f4d5257a32dc6c7ac4 100644 (file)
--- a/src/Makefile.am
+++ b/src/Makefile.am
@@ -1,10 +1,17 @@
 
-bin_PROGRAMS = fastq-grep fastq-kmers
+bin_PROGRAMS = fastq-grep fastq-kmers fastq-match
 
-fastq_grep_SOURCES = kseq.h fastq-grep.c
+fastq_common_src=fastq-common.h fastq-common.c
+fastq_parse_src=fastq-parse.h fastq-parse.c
+fastq_sw_src=fastq-sw.h fastq-sw.c
+
+fastq_grep_SOURCES = fastq-grep.c $(fastq_common_src) $(fastq_parse_src)
 fastq_grep_LDADD = $(PCRE_LIBS) -lz
 
-fastq_kmers_SOURCES = kseq.h fastq-kmers.c
+fastq_kmers_SOURCES = fastq-kmers.c $(fastq_common_src) $(fastq_parse_src)
 fastq_kmers_LDADD = -lz
 
+fastq_match_SOURCES = fastq-match.c $(fastq_common_src) $(fastq_parse_src) $(fastq_sw_src)
+fastq_match_LDADD   = -lz
+