working on unifrac parallelization

[mothur.git] / seqsummarycommand.h

diff --git a/seqsummarycommand.h b/seqsummarycommand.h
index 6d48284baeffe974a2c13ddbb16dfaf95704df90..6abf06a6fcf11bba1a714c6b3efdfd2be37b7285 100644 (file)
--- a/seqsummarycommand.h
+++ b/seqsummarycommand.h
@@ -22,7 +22,25 @@ public:
        
 private:
        bool abort;
-       string fastafile;
+       string fastafile, outputDir;
+       int processors;
+       
+       struct linePair {
+               unsigned long int start;
+               unsigned long int end;
+               linePair(unsigned long int i, unsigned long int j) : start(i), end(j) {}
+       };
+
+       vector<linePair*> lines;
+       vector<int> processIDS;
+       
+       int createProcessesCreateSummary(vector<int>&, vector<int>&, vector<int>&, vector<int>&, vector<int>&, string, string);
+       int driverCreateSummary(vector<int>&, vector<int>&, vector<int>&, vector<int>&, vector<int>&, string, string, linePair*);       
+
+       #ifdef USE_MPI
+       int MPICreateSummary(int, int, vector<int>&, vector<int>&, vector<int>&, vector<int>&, vector<int>&, MPI_File&, MPI_File&, vector<unsigned long int>&); 
+       #endif
+
 
 };