class SeqSummaryCommand : public Command {
public:
SeqSummaryCommand(string);
- ~SeqSummaryCommand();
- int execute();
- void help();
+ SeqSummaryCommand();
+ ~SeqSummaryCommand(){}
+ vector<string> setParameters();
+ string getCommandName() { return "summary.seqs"; }
+ string getCommandCategory() { return "Sequence Processing"; }
+ string getHelpString();
+
+ int execute();
+ void help() { m->mothurOut(getHelpString()); }
private:
bool abort;
- string fastafile, outputDir;
+ string fastafile, outputDir, namefile;
int processors;
+ vector<string> outputNames;
+ map<string, int> nameMap;
struct linePair {
unsigned long int start;