public:
RemoveLineageCommand(string);
+ RemoveLineageCommand();
~RemoveLineageCommand(){};
+ vector<string> getRequiredParameters();
+ vector<string> getValidParameters();
+ vector<string> getRequiredFiles();
+ map<string, vector<string> > getOutputFiles() { return outputTypes; }
int execute();
void help();
private:
set<string> names;
vector<string> outputNames;
+ map<string, vector<string> > outputTypes;
string fastafile, namefile, groupfile, alignfile, listfile, taxfile, outputDir, taxons;
bool abort, dups;