changes to filter.seqs

[mothur.git] / readcluster.h

diff --git a/readcluster.h b/readcluster.h
index 9e62e92aea46e04120c0992e12414d70b6207bba..4574c8071616b47f389527f2fd90a5236326f4cd 100644 (file)
--- a/readcluster.h
+++ b/readcluster.h
@@ -23,11 +23,10 @@ class ReadCluster {
 public:
        ReadCluster(string, float);
        ~ReadCluster();
-       void read(NameAssignment*);
+       int read(NameAssignment*);
        string getOutputFile() { return OutPutFile; }
        void setFormat(string f) { format = f;  }
        ListVector* getListVector()             {       return list;    }
-       //NameAssignment* getNameMap()  {       return nameMap; }
        
 private:
        GlobalData* globaldata;
@@ -35,10 +34,9 @@ private:
        string OutPutFile, format;
        ListVector* list;
        float cutoff;
-       //NameAssignment* nameMap;
+       MothurOut* m;
        
-       void createHClusterFile();
-       void convertPhylip2Column(NameAssignment*);
+       int convertPhylip2Column(NameAssignment*);
 };
 
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