//find out the sequences group
string group = groupmap->getGroup(seqName);
+ if (group == "not found") { m->mothurOut(seqName + " is not in your groupfile, and will be included in the overall total, but not any group total."); m->mothurOutEndLine(); }
+
//do you have a count for this group?
map<string, int>::iterator itGroup = tree[currentNode].groupCount.find(group);