added concensus command and updated calcs

[mothur.git] / parselistcommand.h

diff --git a/parselistcommand.h b/parselistcommand.h
index 73c1070a7ca371cbbea5aa7495814c49146b5d82..0477acdb06e26ada0f64a25370138a75dc7a06ff 100644 (file)
--- a/parselistcommand.h
+++ b/parselistcommand.h
@@ -9,16 +9,12 @@
  *
  */
 
-#include <Carbon/Carbon.h>
-#include <iostream>
-#include <fstream>
-#include <map>
 #include "command.hpp"
 #include "rabundvector.hpp"
 #include "sharedlistvector.h"
 #include "inputdata.h"
 #include "groupmap.h"
-#include "readmatrix.hpp"
+#include "readotu.h"
 
 
 /* The parselist() command:
@@ -41,7 +37,7 @@ private:
        GlobalData* globaldata;
        GroupMap* groupMap;
        InputData* input;
-       ReadMatrix* read;
+       ReadOTUFile* read;
        map<string, ofstream*> filehandles;
        map<string, SharedListVector*> groupOfLists;
        SharedListVector* list;
@@ -53,4 +49,4 @@ private:
        string fileroot;
 };
 
-#endif
\ No newline at end of file
+#endif