Revert to previous commit

[mothur.git] / makegroupcommand.h

diff --git a/makegroupcommand.h b/makegroupcommand.h
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+#ifndef MAKEGROUPCOMMAND_H
+#define MAKEGROUPCOMMAND_H
+
+/*
+ *  makegroupcommand.h
+ *  Mothur
+ *
+ *  Created by westcott on 5/7/10.
+ *  Copyright 2010 Schloss Lab. All rights reserved.
+ *
+ */
+
+#include "command.hpp"
+
+class MakeGroupCommand : public Command {
+       
+public:
+       MakeGroupCommand(string);
+       MakeGroupCommand();     
+       ~MakeGroupCommand(){}
+       
+       vector<string> setParameters();
+       string getCommandName()                 { return "make.group";  }
+       string getCommandCategory()             { return "General";             }
+       string getHelpString(); 
+       string getCitation() { return "http://www.mothur.org/wiki/Make.group"; }
+       string getDescription()         { return "creates a group file"; }
+
+       int execute(); 
+       void help() { m->mothurOut(getHelpString()); }  
+       
+private:
+               
+       string fastaFileName, groups, outputDir, filename, output;
+       vector<string> fastaFileNames;
+       vector<string> groupsNames, outputNames;
+       
+       bool abort;
+};
+
+#endif
+