created mothurOut class to handle logfiles

[mothur.git] / getrabundcommand.h

diff --git a/getrabundcommand.h b/getrabundcommand.h
index 4b2c37f11340e8dfc940f549b2c97a7c8c339b38..ed51be12ca9e9c0a41b9c03a5089cd9fce7b3893 100644 (file)
--- a/getrabundcommand.h
+++ b/getrabundcommand.h
@@ -33,13 +33,10 @@ private:
        InputData* input;
        ListVector* list;
        RAbundVector* rabund;
-       OptionParser* parser;
-       map<string, string> parameters;
-       map<string, string>::iterator it;
-       bool abort, allLines;
-       set<int> lines; //hold lines to be used
+
+       bool abort, allLines, sorted;
        set<string> labels; //holds labels to be used
-       string line, label;
+       string label;
 
        
 };