removed some couts from qualityscores.cpp

[mothur.git] / flowdata.cpp

diff --git a/flowdata.cpp b/flowdata.cpp
index a172a03337303f287c64ed0f8e7352cdfde3db57..39c1f8317a306c1a49488625725cbea7a4c6bd4e 100644 (file)
--- a/flowdata.cpp
+++ b/flowdata.cpp
@@ -68,7 +68,7 @@ bool FlowData::getNext(ifstream& flowFile){
 void FlowData::updateEndFlow(){
        try{
                
-               int currLength = 0;
+               //int currLength = 0;
                float maxIntensity = (float) maxHomoP + 0.49;
                
                int deadSpot = 0;
@@ -212,3 +212,16 @@ void FlowData::printFlows(ofstream& outFlowFile, string scrapCode){
 }
 
 //**********************************************************************************************************************
+
+string FlowData::getName(){
+       
+       try{
+               return seqName;
+       }
+       catch(exception& e) {
+               m->errorOut(e, "FlowData", "getSequence");
+               exit(1);
+       }
+}
+
+//**********************************************************************************************************************