void setSoft(float s) { soft = s; }
void setTrump(float t) { trump = t; }
void setNumSeqs(int num) { numSeqs = num; }
+ vector<int> a, t, g, c, gap;
+
void initialize() {
a.assign(alignmentLength, 0);
protected:
string filter;
- vector<int> a, t, g, c, gap;
int alignmentLength, numSeqs;
float soft;
char trump;