+(require 'org-id)
+(require 'reftex)
+(require 'gnus)
+
;; The following lines are always needed. Choose your own keys.
-(add-to-list 'auto-mode-alist '("\\.org\\'" . org-mode))
-(add-hook 'org-mode-hook 'turn-on-font-lock) ; not needed when global-font-lock-mode is on
+(add-to-list 'auto-mode-alist '("\\.\\(org\\|org_archive\\|txt\\)$" . org-mode))
+(require 'org)
(global-set-key "\C-cl" 'org-store-link)
(global-set-key "\C-ca" 'org-agenda)
(global-set-key "\C-cb" 'org-iswitchb)
(setq org-agenda-files
(quote ("~/projects/debbugs/debbugs.org"
"~/projects/notes/notes.org"
+ "~/projects/notes/refile.org"
+ "~/projects/notes/diary.org"
"~/projects/origins_of_life/ool.org"
"~/projects/sysadmin/sndservers/sndservers.org"
"~/projects/chaim/chaim.org"
; resolve clocks after 10 minutes of idle; use xprintidle
-(setq org-clock-idle-time 10)
-(setq org-clock-x11idle-program-name "xprintidle")
+; (setq org-clock-idle-time 10)
+; (setq org-clock-x11idle-program-name "xprintidle")
; this is from http://doc.norang.ca/org-mode.html#Capture
; use C-M-r for org mode capture
(progn
(reftex-parse-all)
(reftex-set-cite-format
- '((?b . "[[bib::%l][%l-bib]]")
- (?n . "[[note::%l][%l-notes]]")
+ '((?b . "[[bib:%l][%l-bib]]")
+ (?n . "[[notes:%l][%l-notes]]")
(?c . "\\cite{%l}")
(?h . "*** %t\n:PROPERTIES:\n:Custom_ID: %l\n:END:\n[[papers:%l][%l paper]]")))
))
(defun org-mode-reftex-search ()
(interactive)
- (org-open-link-from-string (format "[[notes:%s]]" (reftex-citation t))))
+ (org-open-link-from-string (format "[[notes:%s]]" (first (reftex-citation t)))))
(defun open-research-paper (bibtexkey)
"Open a paper by bibtex key"
(substitute-in-file-name "$HOME/bin/bibtex_to_paper") bibtexkey)))
(org-add-link-type "papers" 'open-research-paper)
+(add-to-list 'org-link-abbrev-alist
+ '("notes" .
+ "~/projects/research/paper_notes.org::#%s"))
+
; I pretty much always want hiearchical checkboxes
(setq org-hierachical-checkbox-statistics nil)
(if (member "ignoreheading" (org-element-property :tags headline))
(setq ad-return-value contents)
ad-do-it))
+
+
+;; helper functions
+(defun bh/is-project-p ()
+ "Any task with a todo keyword subtask"
+ (save-restriction
+ (widen)
+ (let ((has-subtask)
+ (subtree-end (save-excursion (org-end-of-subtree t)))
+ (is-a-task (member (nth 2 (org-heading-components)) org-todo-keywords-1)))
+ (save-excursion
+ (forward-line 1)
+ (while (and (not has-subtask)
+ (< (point) subtree-end)
+ (re-search-forward "^\*+ " subtree-end t))
+ (when (member (org-get-todo-state) org-todo-keywords-1)
+ (setq has-subtask t))))
+ (and is-a-task has-subtask))))
+
+(defun bh/is-project-subtree-p ()
+ "Any task with a todo keyword that is in a project subtree.
+Callers of this function already widen the buffer view."
+ (let ((task (save-excursion (org-back-to-heading 'invisible-ok)
+ (point))))
+ (save-excursion
+ (bh/find-project-task)
+ (if (equal (point) task)
+ nil
+ t))))
+
+(defun bh/is-task-p ()
+ "Any task with a todo keyword and no subtask"
+ (save-restriction
+ (widen)
+ (let ((has-subtask)
+ (subtree-end (save-excursion (org-end-of-subtree t)))
+ (is-a-task (member (nth 2 (org-heading-components)) org-todo-keywords-1)))
+ (save-excursion
+ (forward-line 1)
+ (while (and (not has-subtask)
+ (< (point) subtree-end)
+ (re-search-forward "^\*+ " subtree-end t))
+ (when (member (org-get-todo-state) org-todo-keywords-1)
+ (setq has-subtask t))))
+ (and is-a-task (not has-subtask)))))
+
+(defun bh/is-subproject-p ()
+ "Any task which is a subtask of another project"
+ (let ((is-subproject)
+ (is-a-task (member (nth 2 (org-heading-components)) org-todo-keywords-1)))
+ (save-excursion
+ (while (and (not is-subproject) (org-up-heading-safe))
+ (when (member (nth 2 (org-heading-components)) org-todo-keywords-1)
+ (setq is-subproject t))))
+ (and is-a-task is-subproject)))
+
+(defun bh/list-sublevels-for-projects-indented ()
+ "Set org-tags-match-list-sublevels so when restricted to a subtree we list all subtasks.
+ This is normally used by skipping functions where this variable is already local to the agenda."
+ (if (marker-buffer org-agenda-restrict-begin)
+ (setq org-tags-match-list-sublevels 'indented)
+ (setq org-tags-match-list-sublevels nil))
+ nil)
+
+(defun bh/list-sublevels-for-projects ()
+ "Set org-tags-match-list-sublevels so when restricted to a subtree we list all subtasks.
+ This is normally used by skipping functions where this variable is already local to the agenda."
+ (if (marker-buffer org-agenda-restrict-begin)
+ (setq org-tags-match-list-sublevels t)
+ (setq org-tags-match-list-sublevels nil))
+ nil)
+
+(defvar bh/hide-scheduled-and-waiting-next-tasks t)
+
+(defun bh/toggle-next-task-display ()
+ (interactive)
+ (setq bh/hide-scheduled-and-waiting-next-tasks (not bh/hide-scheduled-and-waiting-next-tasks))
+ (when (equal major-mode 'org-agenda-mode)
+ (org-agenda-redo))
+ (message "%s WAITING and SCHEDULED NEXT Tasks" (if bh/hide-scheduled-and-waiting-next-tasks "Hide" "Show")))
+
+(defun bh/skip-stuck-projects ()
+ "Skip trees that are not stuck projects"
+ (save-restriction
+ (widen)
+ (let ((next-headline (save-excursion (or (outline-next-heading) (point-max)))))
+ (if (bh/is-project-p)
+ (let* ((subtree-end (save-excursion (org-end-of-subtree t)))
+ (has-next ))
+ (save-excursion
+ (forward-line 1)
+ (while (and (not has-next) (< (point) subtree-end) (re-search-forward "^\\*+ NEXT " subtree-end t))
+ (unless (member "WAITING" (org-get-tags-at))
+ (setq has-next t))))
+ (if has-next
+ nil
+ next-headline)) ; a stuck project, has subtasks but no next task
+ nil))))
+
+(defun bh/skip-non-stuck-projects ()
+ "Skip trees that are not stuck projects"
+ ;; (bh/list-sublevels-for-projects-indented)
+ (save-restriction
+ (widen)
+ (let ((next-headline (save-excursion (or (outline-next-heading) (point-max)))))
+ (if (bh/is-project-p)
+ (let* ((subtree-end (save-excursion (org-end-of-subtree t)))
+ (has-next ))
+ (save-excursion
+ (forward-line 1)
+ (while (and (not has-next) (< (point) subtree-end) (re-search-forward "^\\*+ NEXT " subtree-end t))
+ (unless (member "WAITING" (org-get-tags-at))
+ (setq has-next t))))
+ (if has-next
+ next-headline
+ nil)) ; a stuck project, has subtasks but no next task
+ next-headline))))
+
+(defun bh/skip-non-projects ()
+ "Skip trees that are not projects"
+ ;; (bh/list-sublevels-for-projects-indented)
+ (if (save-excursion (bh/skip-non-stuck-projects))
+ (save-restriction
+ (widen)
+ (let ((subtree-end (save-excursion (org-end-of-subtree t))))
+ (cond
+ ((bh/is-project-p)
+ nil)
+ ((and (bh/is-project-subtree-p) (not (bh/is-task-p)))
+ nil)
+ (t
+ subtree-end))))
+ (save-excursion (org-end-of-subtree t))))
+
+(defun bh/skip-project-trees-and-habits ()
+ "Skip trees that are projects"
+ (save-restriction
+ (widen)
+ (let ((subtree-end (save-excursion (org-end-of-subtree t))))
+ (cond
+ ((bh/is-project-p)
+ subtree-end)
+ ((org-is-habit-p)
+ subtree-end)
+ (t
+ nil)))))
+
+(defun bh/skip-projects-and-habits-and-single-tasks ()
+ "Skip trees that are projects, tasks that are habits, single non-project tasks"
+ (save-restriction
+ (widen)
+ (let ((next-headline (save-excursion (or (outline-next-heading) (point-max)))))
+ (cond
+ ((org-is-habit-p)
+ next-headline)
+ ((and bh/hide-scheduled-and-waiting-next-tasks
+ (member "WAITING" (org-get-tags-at)))
+ next-headline)
+ ((bh/is-project-p)
+ next-headline)
+ ((and (bh/is-task-p) (not (bh/is-project-subtree-p)))
+ next-headline)
+ (t
+ nil)))))
+
+(defun bh/skip-project-tasks-maybe ()
+ "Show tasks related to the current restriction.
+When restricted to a project, skip project and sub project tasks, habits, NEXT tasks, and loose tasks.
+When not restricted, skip project and sub-project tasks, habits, and project related tasks."
+ (save-restriction
+ (widen)
+ (let* ((subtree-end (save-excursion (org-end-of-subtree t)))
+ (next-headline (save-excursion (or (outline-next-heading) (point-max))))
+ (limit-to-project (marker-buffer org-agenda-restrict-begin)))
+ (cond
+ ((bh/is-project-p)
+ next-headline)
+ ((org-is-habit-p)
+ subtree-end)
+ ((and (not limit-to-project)
+ (bh/is-project-subtree-p))
+ subtree-end)
+ ((and limit-to-project
+ (bh/is-project-subtree-p)
+ (member (org-get-todo-state) (list "NEXT")))
+ subtree-end)
+ (t
+ nil)))))
+
+(defun bh/skip-project-tasks ()
+ "Show non-project tasks.
+Skip project and sub-project tasks, habits, and project related tasks."
+ (save-restriction
+ (widen)
+ (let* ((subtree-end (save-excursion (org-end-of-subtree t))))
+ (cond
+ ((bh/is-project-p)
+ subtree-end)
+ ((org-is-habit-p)
+ subtree-end)
+ ((bh/is-project-subtree-p)
+ subtree-end)
+ (t
+ nil)))))
+
+(defun bh/skip-non-project-tasks ()
+ "Show project tasks.
+Skip project and sub-project tasks, habits, and loose non-project tasks."
+ (save-restriction
+ (widen)
+ (let* ((subtree-end (save-excursion (org-end-of-subtree t)))
+ (next-headline (save-excursion (or (outline-next-heading) (point-max)))))
+ (cond
+ ((bh/is-project-p)
+ next-headline)
+ ((org-is-habit-p)
+ subtree-end)
+ ((and (bh/is-project-subtree-p)
+ (member (org-get-todo-state) (list "NEXT")))
+ subtree-end)
+ ((not (bh/is-project-subtree-p))
+ subtree-end)
+ (t
+ nil)))))
+
+(defun bh/skip-projects-and-habits ()
+ "Skip trees that are projects and tasks that are habits"
+ (save-restriction
+ (widen)
+ (let ((subtree-end (save-excursion (org-end-of-subtree t))))
+ (cond
+ ((bh/is-project-p)
+ subtree-end)
+ ((org-is-habit-p)
+ subtree-end)
+ (t
+ nil)))))
+
+(defun bh/skip-non-subprojects ()
+ "Skip trees that are not projects"
+ (let ((next-headline (save-excursion (outline-next-heading))))
+ (if (bh/is-subproject-p)
+ nil
+ next-headline)))
+;
+;; Resume clocking task when emacs is restarted
+(org-clock-persistence-insinuate)
+;;
+;; Show lot of clocking history so it's easy to pick items off the C-F11 list
+(setq org-clock-history-length 23)
+;; Resume clocking task on clock-in if the clock is open
+(setq org-clock-in-resume t)
+;; Change tasks to NEXT when clocking in
+(setq org-clock-in-switch-to-state 'bh/clock-in-to-next)
+;; Separate drawers for clocking and logs
+(setq org-drawers (quote ("PROPERTIES" "LOGBOOK")))
+;; Save clock data and state changes and notes in the LOGBOOK drawer
+(setq org-clock-into-drawer t)
+(setq org-log-into-drawer t)
+;; Sometimes I change tasks I'm clocking quickly - this removes clocked tasks with 0:00 duration
+(setq org-clock-out-remove-zero-time-clocks t)
+;; Clock out when moving task to a done state
+(setq org-clock-out-when-done t)
+;; Save the running clock and all clock history when exiting Emacs, load it on startup
+(setq org-clock-persist t)
+;; Do not prompt to resume an active clock
+(setq org-clock-persist-query-resume nil)
+;; Enable auto clock resolution for finding open clocks
+(setq org-clock-auto-clock-resolution (quote when-no-clock-is-running))
+;; Include current clocking task in clock reports
+(setq org-clock-report-include-clocking-task t)
+
+
+(defvar bh/keep-clock-running nil)
+
+(defun bh/clock-in-to-next (kw)
+ "Switch a task from TODO to NEXT when clocking in.
+Skips capture tasks, projects, and subprojects.
+Switch projects and subprojects from NEXT back to TODO"
+ (when (not (and (boundp 'org-capture-mode) org-capture-mode))
+ (cond
+ ((and (member (org-get-todo-state) (list "TODO"))
+ (bh/is-task-p))
+ "NEXT")
+ ((and (member (org-get-todo-state) (list "NEXT"))
+ (bh/is-project-p))
+ "TODO"))))
+
+(defun bh/find-project-task ()
+ "Move point to the parent (project) task if any"
+ (save-restriction
+ (widen)
+ (let ((parent-task (save-excursion (org-back-to-heading 'invisible-ok) (point))))
+ (while (org-up-heading-safe)
+ (when (member (nth 2 (org-heading-components)) org-todo-keywords-1)
+ (setq parent-task (point))))
+ (goto-char parent-task)
+ parent-task)))
+
+(defun bh/punch-in (arg)
+ "Start continuous clocking and set the default task to the
+selected task. If no task is selected set the Organization task
+as the default task."
+ (interactive "p")
+ (setq bh/keep-clock-running t)
+ (if (equal major-mode 'org-agenda-mode)
+ ;;
+ ;; We're in the agenda
+ ;;
+ (let* ((marker (org-get-at-bol 'org-hd-marker))
+ (tags (org-with-point-at marker (org-get-tags-at))))
+ (if (and (eq arg 4) tags)
+ (org-agenda-clock-in '(16))
+ (bh/clock-in-organization-task-as-default)))
+ ;;
+ ;; We are not in the agenda
+ ;;
+ (save-restriction
+ (widen)
+ ; Find the tags on the current task
+ (if (and (equal major-mode 'org-mode) (not (org-before-first-heading-p)) (eq arg 4))
+ (org-clock-in '(16))
+ (bh/clock-in-organization-task-as-default)))))
+
+(defun bh/punch-out ()
+ (interactive)
+ (setq bh/keep-clock-running nil)
+ (when (org-clock-is-active)
+ (org-clock-out))
+ (org-agenda-remove-restriction-lock))
+
+(defun bh/clock-in-default-task ()
+ (save-excursion
+ (org-with-point-at org-clock-default-task
+ (org-clock-in))))
+
+(defun bh/clock-in-parent-task ()
+ "Move point to the parent (project) task if any and clock in"
+ (let ((parent-task))
+ (save-excursion
+ (save-restriction
+ (widen)
+ (while (and (not parent-task) (org-up-heading-safe))
+ (when (member (nth 2 (org-heading-components)) org-todo-keywords-1)
+ (setq parent-task (point))))
+ (if parent-task
+ (org-with-point-at parent-task
+ (org-clock-in))
+ (when bh/keep-clock-running
+ (bh/clock-in-default-task)))))))
+
+(defvar bh/organization-task-id "e22cb8bf-07c7-408b-8f60-ff3aadac95e4")
+
+(defun bh/clock-in-organization-task-as-default ()
+ (interactive)
+ (org-with-point-at (org-id-find bh/organization-task-id 'marker)
+ (org-clock-in '(16))))
+
+(defun bh/clock-out-maybe ()
+ (when (and bh/keep-clock-running
+ (not org-clock-clocking-in)
+ (marker-buffer org-clock-default-task)
+ (not org-clock-resolving-clocks-due-to-idleness))
+ (bh/clock-in-parent-task)))
+
+(add-hook 'org-clock-out-hook 'bh/clock-out-maybe 'append)
+
+(require 'org-id)
+(defun bh/clock-in-task-by-id (id)
+ "Clock in a task by id"
+ (org-with-point-at (org-id-find id 'marker)
+ (org-clock-in nil)))
+
+(defun bh/clock-in-last-task (arg)
+ "Clock in the interrupted task if there is one
+Skip the default task and get the next one.
+A prefix arg forces clock in of the default task."
+ (interactive "p")
+ (let ((clock-in-to-task
+ (cond
+ ((eq arg 4) org-clock-default-task)
+ ((and (org-clock-is-active)
+ (equal org-clock-default-task (cadr org-clock-history)))
+ (caddr org-clock-history))
+ ((org-clock-is-active) (cadr org-clock-history))
+ ((equal org-clock-default-task (car org-clock-history)) (cadr org-clock-history))
+ (t (car org-clock-history)))))
+ (widen)
+ (org-with-point-at clock-in-to-task
+ (org-clock-in nil))))
+