"~/projects/origins_of_life/ool.org"
"~/projects/sysadmin/sndservers/sndservers.org"
"~/projects/chaim/chaim.org"
- "~/projects/chaim/papers/gwas_paper_2012/gwas_paper.org"
"~/projects/reviews/reviews.org"
"~/projects/fh/fh.org")))
+(set-register ?n (cons 'file "~/projects/notes/notes.org"))
+(set-register ?r (cons 'file "~/projects/notes/refile.org"))
+(set-register ?o (cons 'file "~/projects/origins_of_life/ool.org"))
+(set-register ?s (cons 'file "~/projects/sysadmin/sndservers/sndservers.org"))
+(set-register ?c (cons 'file "~/projects/chaim/chaim.org"))
+(set-register ?R (cons 'file "~/projects/reviews/reviews.org"))
+(set-register ?d (cons 'file "~/projects/notes/diary.org"))
+
(setq org-global-properties '(("Effort_ALL 0 0:10 0:30 1:00 2:00 3:00 4:00 5:00 6:00 7:00")))
-(setq org-columns-default-format "%40ITEM(Task) %TAGS %PRIORITY %TODO %13SCHEDULED %13DEADLINE %6Effort{:} %CLOCKSUM")
+(setq org-columns-default-format "%40ITEM(Task) %6Effort{:} %CLOCKSUM %PRIORITY %TODO %13SCHEDULED %13DEADLINE %TAGS")
(setq org-default-notes-file "~/projects/notes/notes.org")
(setq org-capture-templates ;; mail-specific note template, identified by "m"
"* %?\n%U\n" :clock-in t :clock-resume t)
("w" "org-protocol" entry (file "~/projects/notes/refile.org")
"* TODO Review %c\n%U\n" :immediate-finish t)
- ("m" "Meeting" entry (file "~/projects/notes/refile.org")
+ ("M" "Meeting" entry (file "~/projects/notes/refile.org")
"* MEETING with %? :MEETING:\n%U" :clock-in t :clock-resume t)
("p" "Phone call" entry (file "~/projects/notes/refile.org")
"* PHONE %? :PHONE:\n%U" :clock-in t :clock-resume t)
+ ("J" "job" entry (file "~/projects/notes/refile.org")
+ "* TODO Apply for %a%? :job:\nSCHEDULED: %(format-time-string \"<%Y-%m-%d %a 17:00-17:30>\")\n%U\n" :clock-in t :clock-resume t)
("h" "Habit" entry (file "~/projects/notes/refile.org")
"* NEXT %?\n%U\n%a\nSCHEDULED: %(format-time-string \"<%Y-%m-%d %a .+1d/3d>\")\n:PROPERTIES:\n:STYLE: habit\n:REPEAT_TO_STATE: NEXT\n:END:\n")
)
(global-set-key (kbd "<f9> n") 'bh/toggle-next-task-display)
(global-set-key (kbd "<f9> w") 'widen)
+; change the outline mode prefix from C-c @ to C-c C-2
+(setq outline-minor-mode-prefix "C-c C-2")
+(add-hook 'outline-minor-mode-hook
+ (lambda () (local-set-key (kbd "C-c C-2")
+ outline-mode-prefix-map)))
+
(global-set-key (kbd "<f9> I") 'bh/punch-in)
(global-set-key (kbd "<f9> O") 'bh/punch-out)
; Allow refile to create parent tasks with confirmation
(setq org-refile-allow-creating-parent-nodes (quote confirm))
-; Use IDO for both buffer and file completion and ido-everywhere to t
-(setq org-completion-use-ido t)
-(setq ido-everywhere t)
-(setq ido-max-directory-size 100000)
-(ido-mode (quote both))
-; Use the current window when visiting files and buffers with ido
-(setq ido-default-file-method 'selected-window)
-(setq ido-default-buffer-method 'selected-window)
-; Use the current window for indirect buffer display
-(setq org-indirect-buffer-display 'current-window)
+; ; Use IDO for both buffer and file completion and ido-everywhere to t
+; (setq org-completion-use-ido t)
+; (setq ido-everywhere t)
+; (setq ido-max-directory-size 100000)
+; (ido-mode (quote both))
+; ; Use the current window when visiting files and buffers with ido
+; (setq ido-default-file-method 'selected-window)
+; (setq ido-default-buffer-method 'selected-window)
+; ; Use the current window for indirect buffer display
+; (setq org-indirect-buffer-display 'current-window)
;;;; Refile settings
(defadvice org-protocol-capture (before set-org-protocol-flag activate)
(setq my-org-protocol-flag t))
+(defadvice org-insert-todo-heading (after dla/create-id activate)
+ (org-id-get-create)
+ )
;; org modules
(add-to-list 'org-modules 'org-habit)
(progn
(reftex-parse-all)
(reftex-set-cite-format
- '((?b . "[[bib::%l][%l-bib]]")
- (?n . "[[note::%l][%l-notes]]")
+ '((?b . "[[bib:%l][%l-bib]]")
+ (?n . "[[notes:%l][%l-notes]]")
(?c . "\\cite{%l}")
- (?h . "*** %t\n:PROPERTIES:\n:Custom_ID: %l\n:END:\n[[papers:%l][%l paper]]")))
+ (?h . "*** %t\n:PROPERTIES:\n:Custom_ID: %l\n:END:\n[[papers:%l][%l xoj]] [[papers-pdf:%l][pdf]]")))
))
(define-key org-mode-map (kbd "C-c )") 'reftex-citation)
(define-key org-mode-map (kbd "C-c [") 'reftex-citation)
(defun org-mode-reftex-search ()
(interactive)
- (org-open-link-from-string (format "[[notes:%s]]" (reftex-citation t))))
+ (org-open-link-from-string (format "[[notes:%s]]" (first (reftex-citation t)))))
(defun open-research-paper (bibtexkey)
"Open a paper by bibtex key"
(format "%s %s"
(substitute-in-file-name "$HOME/bin/bibtex_to_paper") bibtexkey)))
(org-add-link-type "papers" 'open-research-paper)
+(defun open-research-paper-pdf (bibtexkey)
+ "Open a paper pdf by bibtex key"
+ (interactive "bibtex key: ")
+ (shell-command
+ (format "%s -p evince %s"
+ (substitute-in-file-name "$HOME/bin/bibtex_to_paper") bibtexkey)))
+(org-add-link-type "papers-pdf" 'open-research-paper-pdf)
+
+(add-to-list 'org-link-abbrev-alist
+ '("notes" .
+ "~/projects/research/paper_notes.org::#%s"))
; I pretty much always want hiearchical checkboxes
(setq org-hierachical-checkbox-statistics nil)
;; org mode ical export
(setq org-icalendar-timezone "America/Los_Angeles")
(setq org-icalendar-use-scheduled '(todo-start event-if-todo))
-(setq org-icalendar-store-UID t)
+;; we already add the id manually
+;; (setq org-icalendar-store-UID t)
;; org babel support
(org-babel-do-load-languages
'org-babel-load-languages
'((emacs-lisp . t )
(R . t)
- (latex . t)))
+ (latex . t)
+ (ditaa . t)
+ ))
;; org-babel-by-backend
(defmacro org-babel-by-backend (&rest body)
`(case (if (boundp 'backend)
-;; org latex
-;; stolen from http://kieranhealy.org/esk/kjhealy.html
-(require 'org-latex)
-;; Choose either listings or minted for exporting source code blocks.
-;; Using minted (as here) requires pygments be installed. To use the
-;; default listings package instead, use
-;; (setq org-latex-listings t)
-;; and change references to "minted" below to "listings"
-; (setq org-latex-listings 'minted)
-
-;; default settings for minted code blocks
-(setq org-latex-minted-options
- '(;("frame" "single")
- ("bgcolor" "bg") ; bg will need to be defined in the preamble of your document. It's defined in org-preamble-pdflatex.sty and org-preamble-xelatex.sty below.
- ("fontsize" "\\small")
- ))
-;; turn off the default toc behavior; deal with it properly in headers to files.
-(defun org-latex-no-toc (depth)
- (when depth
- (format "%% Org-mode is exporting headings to %s levels.\n"
- depth)))
-(setq org-latex-format-toc-function 'org-latex-no-toc)
+;; ;; org latex
+;; ;; stolen from http://kieranhealy.org/esk/kjhealy.html
+;; (require 'org-latex)
+;; ;; Choose either listings or minted for exporting source code blocks.
+;; ;; Using minted (as here) requires pygments be installed. To use the
+;; ;; default listings package instead, use
+;; ;; (setq org-latex-listings t)
+;; ;; and change references to "minted" below to "listings"
+;; ; (setq org-latex-listings 'minted)
+;;
+;; ;; default settings for minted code blocks
+;; (setq org-latex-minted-options
+;; '(;("frame" "single")
+;; ("bgcolor" "bg") ; bg will need to be defined in the preamble of your document. It's defined in org-preamble-pdflatex.sty and org-preamble-xelatex.sty below.
+;; ("fontsize" "\\small")
+;; ))
+;; ;; turn off the default toc behavior; deal with it properly in headers to files.
+;; (defun org-latex-no-toc (depth)
+;; (when depth
+;; (format "%% Org-mode is exporting headings to %s levels.\n"
+;; depth)))
+;; (setq org-latex-format-toc-function 'org-latex-no-toc)
(require 'ox-latex)
(add-to-list 'org-latex-classes
("\\paragraph{%s}" . "\\paragraph*{%s}")
("\\subparagraph{%s}" . "\\subparagraph*{%s}")))
+(setq org-beamer-outline-frame-options "")
+(require 'ox-beamer)
+(add-to-list 'org-latex-classes
+ '("beamer"
+ "\\documentclass[ignorenonframetext]{beamer}
+[NO-DEFAULT-PACKAGES]
+[PACKAGES]
+[EXTRA]"
+ ("\\section{%s}" . "\\section*{%s}")
+ ("\\subsection{%s}" . "\\subsection*{%s}")
+ ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
+ ("\\paragraph{%s}" . "\\paragraph*{%s}")
+ ("\\subparagraph{%s}" . "\\subparagraph*{%s}")))
+
(add-to-list 'org-latex-classes
'("membook"
"\\documentclass[11pt,oneside]{memoir}\n"
(setq ad-return-value contents)
ad-do-it))
+;; keep latex logfiles
+
+(setq org-latex-remove-logfiles nil)
;; helper functions
(defun bh/is-project-p ()
(setq org-drawers (quote ("PROPERTIES" "LOGBOOK")))
;; Save clock data and state changes and notes in the LOGBOOK drawer
(setq org-clock-into-drawer t)
+(setq org-log-into-drawer t)
;; Sometimes I change tasks I'm clocking quickly - this removes clocked tasks with 0:00 duration
(setq org-clock-out-remove-zero-time-clocks t)
;; Clock out when moving task to a done state
(org-with-point-at clock-in-to-task
(org-clock-in nil))))
+
+; allow for zero-width-space to be a break in regexp too
+(setcar org-emphasis-regexp-components " [:space:] \t('\"{")
+(setcar (nthcdr 1 org-emphasis-regexp-components) " [:space:]- \t.,:!?;'\")}\\")
+(org-set-emph-re 'org-emphasis-regexp-components org-emphasis-regexp-components)
projects / lib.git / blobdiff