public:
ClassifySeqsCommand(string);
+ ClassifySeqsCommand();
~ClassifySeqsCommand();
+ vector<string> getRequiredParameters();
+ vector<string> getValidParameters();
+ vector<string> getRequiredFiles();
+ map<string, vector<string> > getOutputFiles() { return outputTypes; }
int execute();
void help();
vector<string> fastaFileNames;
vector<string> namefileNames;
vector<string> groupfileNames;
+ vector<string> outputNames;
map<string, vector<string> > nameMap;
map<string, vector<string> >::iterator itNames;
+ map<string, vector<string> > outputTypes;
Classify* classify;