]> git.donarmstrong.com Git - mothur.git/blobdiff - Mothur.xcodeproj/project.pbxproj
Fixed validParameter() method so line parameter can use dashes without breaking the...
[mothur.git] / Mothur.xcodeproj / project.pbxproj
index a84195d4332a491ff9c0e7f0ff7832f92eccb396..31fc48121d94014c71b2a8b9954acde1b77f135c 100644 (file)
                3746107E0F4064D100460C57 /* weighted.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 3746107D0F4064D100460C57 /* weighted.cpp */; };
                374610830F40652400460C57 /* unweighted.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 374610820F40652400460C57 /* unweighted.cpp */; };
                3746109D0F40657600460C57 /* unifracunweightedcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 3746109C0F40657600460C57 /* unifracunweightedcommand.cpp */; };
-               375873A70F7D61240040F377 /* coverage.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 3758738B0F7D61240040F377 /* coverage.cpp */; };
-               375873A80F7D61240040F377 /* fullmatrix.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 3758738D0F7D61240040F377 /* fullmatrix.cpp */; };
-               375873A90F7D61240040F377 /* heatmap.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 3758738F0F7D61240040F377 /* heatmap.cpp */; };
-               375873AA0F7D61240040F377 /* heatmapcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873910F7D61240040F377 /* heatmapcommand.cpp */; };
-               375873AB0F7D61240040F377 /* libshuffcommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873930F7D61240040F377 /* libshuffcommand.cpp */; };
-               375873AC0F7D61240040F377 /* nocommands.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873950F7D61240040F377 /* nocommands.cpp */; };
-               375873AD0F7D61240040F377 /* sharedanderberg.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873980F7D61240040F377 /* sharedanderberg.cpp */; };
-               375873AE0F7D61240040F377 /* sharedbraycurtis.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 3758739A0F7D61240040F377 /* sharedbraycurtis.cpp */; };
-               375873AF0F7D61240040F377 /* sharedkulczynski.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 3758739C0F7D61240040F377 /* sharedkulczynski.cpp */; };
-               375873B00F7D61240040F377 /* sharedkulczynskicody.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 3758739E0F7D61240040F377 /* sharedkulczynskicody.cpp */; };
-               375873B10F7D61240040F377 /* sharedlennon.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873A00F7D61240040F377 /* sharedlennon.cpp */; };
-               375873B20F7D61240040F377 /* sharedmorisitahorn.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873A20F7D61240040F377 /* sharedmorisitahorn.cpp */; };
-               375873B30F7D61240040F377 /* sharedochiai.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873A50F7D61240040F377 /* sharedochiai.cpp */; };
-               375873E30F7D63B50040F377 /* sharedanderberg.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873E20F7D63B50040F377 /* sharedanderberg.cpp */; };
+               37519A6B0F80E6EB00FED5E8 /* sharedanderbergs.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 37519A6A0F80E6EB00FED5E8 /* sharedanderbergs.cpp */; };
                375873E70F7D63E90040F377 /* coverage.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873E50F7D63E90040F377 /* coverage.cpp */; };
                375873EC0F7D64520040F377 /* fullmatrix.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873EB0F7D64520040F377 /* fullmatrix.cpp */; };
                375873EF0F7D646F0040F377 /* heatmap.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 375873EE0F7D646F0040F377 /* heatmap.cpp */; };
                EB6F015B0F6AC1670048081A /* sharedbdiversity.cpp in Sources */ = {isa = PBXBuildFile; fileRef = EB6F015A0F6AC1670048081A /* sharedbdiversity.cpp */; };
                EB9303EB0F534D9400E8EF26 /* logsd.cpp in Sources */ = {isa = PBXBuildFile; fileRef = EB9303EA0F534D9400E8EF26 /* logsd.cpp */; };
                EB9303F90F53517300E8EF26 /* geom.cpp in Sources */ = {isa = PBXBuildFile; fileRef = EB9303F80F53517300E8EF26 /* geom.cpp */; };
+               EBC564190F81479000A5AC46 /* sharedjackknife.cpp in Sources */ = {isa = PBXBuildFile; fileRef = EBC564180F81479000A5AC46 /* sharedjackknife.cpp */; };
 /* End PBXBuildFile section */
 
 /* Begin PBXCopyFilesBuildPhase section */
                374610820F40652400460C57 /* unweighted.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = unweighted.cpp; sourceTree = "<group>"; };
                3746109B0F40657600460C57 /* unifracunweightedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = unifracunweightedcommand.h; sourceTree = "<group>"; };
                3746109C0F40657600460C57 /* unifracunweightedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = unifracunweightedcommand.cpp; sourceTree = "<group>"; };
-               3758738B0F7D61240040F377 /* coverage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = coverage.cpp; sourceTree = "<group>"; };
-               3758738C0F7D61240040F377 /* coverage.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = coverage.h; sourceTree = "<group>"; };
-               3758738D0F7D61240040F377 /* fullmatrix.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = fullmatrix.cpp; sourceTree = "<group>"; };
-               3758738E0F7D61240040F377 /* fullmatrix.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = fullmatrix.h; sourceTree = "<group>"; };
-               3758738F0F7D61240040F377 /* heatmap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = heatmap.cpp; sourceTree = "<group>"; };
-               375873900F7D61240040F377 /* heatmap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = heatmap.h; sourceTree = "<group>"; };
-               375873910F7D61240040F377 /* heatmapcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = heatmapcommand.cpp; sourceTree = "<group>"; };
-               375873920F7D61240040F377 /* heatmapcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = heatmapcommand.h; sourceTree = "<group>"; };
-               375873930F7D61240040F377 /* libshuffcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = libshuffcommand.cpp; sourceTree = "<group>"; };
-               375873940F7D61240040F377 /* libshuffcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = libshuffcommand.h; sourceTree = "<group>"; };
-               375873950F7D61240040F377 /* nocommands.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = nocommands.cpp; sourceTree = "<group>"; };
-               375873960F7D61240040F377 /* nocommands.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = nocommands.h; sourceTree = "<group>"; };
-               375873970F7D61240040F377 /* nseqs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = nseqs.h; sourceTree = "<group>"; };
-               375873980F7D61240040F377 /* sharedanderberg.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedanderberg.cpp; sourceTree = "<group>"; };
-               375873990F7D61240040F377 /* sharedanderberg.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedanderberg.h; sourceTree = "<group>"; };
-               3758739A0F7D61240040F377 /* sharedbraycurtis.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedbraycurtis.cpp; sourceTree = "<group>"; };
-               3758739B0F7D61240040F377 /* sharedbraycurtis.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedbraycurtis.h; sourceTree = "<group>"; };
-               3758739C0F7D61240040F377 /* sharedkulczynski.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedkulczynski.cpp; sourceTree = "<group>"; };
-               3758739D0F7D61240040F377 /* sharedkulczynski.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedkulczynski.h; sourceTree = "<group>"; };
-               3758739E0F7D61240040F377 /* sharedkulczynskicody.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedkulczynskicody.cpp; sourceTree = "<group>"; };
-               3758739F0F7D61240040F377 /* sharedkulczynskicody.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedkulczynskicody.h; sourceTree = "<group>"; };
-               375873A00F7D61240040F377 /* sharedlennon.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedlennon.cpp; sourceTree = "<group>"; };
-               375873A10F7D61240040F377 /* sharedlennon.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedlennon.h; sourceTree = "<group>"; };
-               375873A20F7D61240040F377 /* sharedmorisitahorn.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedmorisitahorn.cpp; sourceTree = "<group>"; };
-               375873A30F7D61240040F377 /* sharedmorisitahorn.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedmorisitahorn.h; sourceTree = "<group>"; };
-               375873A40F7D61240040F377 /* sharednseqs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharednseqs.h; sourceTree = "<group>"; };
-               375873A50F7D61240040F377 /* sharedochiai.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedochiai.cpp; sourceTree = "<group>"; };
-               375873A60F7D61240040F377 /* sharedochiai.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedochiai.h; sourceTree = "<group>"; };
-               375873E20F7D63B50040F377 /* sharedanderberg.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedanderberg.cpp; sourceTree = "<group>"; };
+               37519A690F80E6EB00FED5E8 /* sharedanderbergs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedanderbergs.h; sourceTree = "<group>"; };
+               37519A6A0F80E6EB00FED5E8 /* sharedanderbergs.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedanderbergs.cpp; sourceTree = "<group>"; };
                375873E50F7D63E90040F377 /* coverage.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = coverage.cpp; sourceTree = "<group>"; };
                375873E60F7D63E90040F377 /* coverage.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = coverage.h; sourceTree = "<group>"; };
                375873EA0F7D64520040F377 /* fullmatrix.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = fullmatrix.h; sourceTree = "<group>"; };
                375873F60F7D649C0040F377 /* nocommands.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = nocommands.cpp; sourceTree = "<group>"; };
                375873F70F7D649C0040F377 /* nocommands.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = nocommands.h; sourceTree = "<group>"; };
                375873F90F7D64AB0040F377 /* nseqs.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = nseqs.h; sourceTree = "<group>"; };
-               375873FA0F7D64D20040F377 /* sharedanderberg.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedanderberg.h; sourceTree = "<group>"; };
                375873FB0F7D64DA0040F377 /* sharedbraycurtis.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedbraycurtis.h; sourceTree = "<group>"; };
                375873FC0F7D64DA0040F377 /* sharedbraycurtis.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedbraycurtis.cpp; sourceTree = "<group>"; };
                375873FE0F7D64EF0040F377 /* sharedkulczynski.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedkulczynski.cpp; sourceTree = "<group>"; };
                EB9303EA0F534D9400E8EF26 /* logsd.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = logsd.cpp; sourceTree = "<group>"; };
                EB9303F70F53517300E8EF26 /* geom.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = geom.h; sourceTree = "<group>"; };
                EB9303F80F53517300E8EF26 /* geom.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = geom.cpp; sourceTree = "<group>"; };
+               EBC564170F81479000A5AC46 /* sharedjackknife.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sharedjackknife.h; sourceTree = "<group>"; };
+               EBC564180F81479000A5AC46 /* sharedjackknife.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sharedjackknife.cpp; sourceTree = "<group>"; };
 /* End PBXFileReference section */
 
 /* Begin PBXFrameworksBuildPhase section */
                                37D927EF0F21331F001D4494 /* mothur.cpp */,
                                37D927F10F21331F001D4494 /* nameassignment.hpp */,
                                37D927F00F21331F001D4494 /* nameassignment.cpp */,
-                               3758738B0F7D61240040F377 /* coverage.cpp */,
-                               3758738C0F7D61240040F377 /* coverage.h */,
-                               3758738D0F7D61240040F377 /* fullmatrix.cpp */,
-                               3758738E0F7D61240040F377 /* fullmatrix.h */,
-                               3758738F0F7D61240040F377 /* heatmap.cpp */,
-                               375873900F7D61240040F377 /* heatmap.h */,
-                               375873910F7D61240040F377 /* heatmapcommand.cpp */,
-                               375873920F7D61240040F377 /* heatmapcommand.h */,
-                               375873930F7D61240040F377 /* libshuffcommand.cpp */,
-                               375873940F7D61240040F377 /* libshuffcommand.h */,
-                               375873950F7D61240040F377 /* nocommands.cpp */,
-                               375873960F7D61240040F377 /* nocommands.h */,
-                               375873970F7D61240040F377 /* nseqs.h */,
-                               375873980F7D61240040F377 /* sharedanderberg.cpp */,
-                               375873990F7D61240040F377 /* sharedanderberg.h */,
-                               3758739A0F7D61240040F377 /* sharedbraycurtis.cpp */,
-                               3758739B0F7D61240040F377 /* sharedbraycurtis.h */,
-                               3758739C0F7D61240040F377 /* sharedkulczynski.cpp */,
-                               3758739D0F7D61240040F377 /* sharedkulczynski.h */,
-                               3758739E0F7D61240040F377 /* sharedkulczynskicody.cpp */,
-                               3758739F0F7D61240040F377 /* sharedkulczynskicody.h */,
-                               375873A00F7D61240040F377 /* sharedlennon.cpp */,
-                               375873A10F7D61240040F377 /* sharedlennon.h */,
-                               375873A20F7D61240040F377 /* sharedmorisitahorn.cpp */,
-                               375873A30F7D61240040F377 /* sharedmorisitahorn.h */,
-                               375873A40F7D61240040F377 /* sharednseqs.h */,
-                               375873A50F7D61240040F377 /* sharedochiai.cpp */,
-                               375873A60F7D61240040F377 /* sharedochiai.h */,
                                37D927F60F21331F001D4494 /* observable.h */,
                                37D927FC0F21331F001D4494 /* progress.hpp */,
                                37D927FB0F21331F001D4494 /* progress.cpp */,
                                37D9281E0F21331F001D4494 /* shannon.cpp */,
                                37D928230F21331F001D4494 /* sharedace.h */,
                                37D928220F21331F001D4494 /* sharedace.cpp */,
-                               375873FA0F7D64D20040F377 /* sharedanderberg.h */,
-                               375873E20F7D63B50040F377 /* sharedanderberg.cpp */,
+                               37519A690F80E6EB00FED5E8 /* sharedanderbergs.h */,
+                               37519A6A0F80E6EB00FED5E8 /* sharedanderbergs.cpp */,
                                375873FB0F7D64DA0040F377 /* sharedbraycurtis.h */,
                                375873FC0F7D64DA0040F377 /* sharedbraycurtis.cpp */,
                                EB6F01590F6AC1670048081A /* sharedbdiversity.h */,
                                37D928240F21331F001D4494 /* sharedchao1.cpp */,
                                37D928290F21331F001D4494 /* sharedjabund.h */,
                                37D928280F21331F001D4494 /* sharedjabund.cpp */,
+                               EBC564170F81479000A5AC46 /* sharedjackknife.h */,
+                               EBC564180F81479000A5AC46 /* sharedjackknife.cpp */,
                                37D9282B0F21331F001D4494 /* sharedjclass.h */,
                                37D9282A0F21331F001D4494 /* sharedjclass.cpp */,
                                37D9282D0F21331F001D4494 /* sharedjest.h */,
                                EB1216E50F61ACFB004A865F /* bstick.cpp in Sources */,
                                EB1217230F61C9AC004A865F /* sharedkstest.cpp in Sources */,
                                EB6F015B0F6AC1670048081A /* sharedbdiversity.cpp in Sources */,
-                               375873A70F7D61240040F377 /* coverage.cpp in Sources */,
-                               375873A80F7D61240040F377 /* fullmatrix.cpp in Sources */,
-                               375873A90F7D61240040F377 /* heatmap.cpp in Sources */,
-                               375873AA0F7D61240040F377 /* heatmapcommand.cpp in Sources */,
-                               375873AB0F7D61240040F377 /* libshuffcommand.cpp in Sources */,
-                               375873AC0F7D61240040F377 /* nocommands.cpp in Sources */,
-                               375873AD0F7D61240040F377 /* sharedanderberg.cpp in Sources */,
-                               375873AE0F7D61240040F377 /* sharedbraycurtis.cpp in Sources */,
-                               375873AF0F7D61240040F377 /* sharedkulczynski.cpp in Sources */,
-                               375873B00F7D61240040F377 /* sharedkulczynskicody.cpp in Sources */,
-                               375873B10F7D61240040F377 /* sharedlennon.cpp in Sources */,
-                               375873B20F7D61240040F377 /* sharedmorisitahorn.cpp in Sources */,
-                               375873B30F7D61240040F377 /* sharedochiai.cpp in Sources */,
-                               375873E30F7D63B50040F377 /* sharedanderberg.cpp in Sources */,
                                375873E70F7D63E90040F377 /* coverage.cpp in Sources */,
                                375873EC0F7D64520040F377 /* fullmatrix.cpp in Sources */,
                                375873EF0F7D646F0040F377 /* heatmap.cpp in Sources */,
                                375874060F7D64EF0040F377 /* sharedkulczynskicody.cpp in Sources */,
                                3758740C0F7D64FC0040F377 /* sharedmorisitahorn.cpp in Sources */,
                                3758740D0F7D64FC0040F377 /* sharedochiai.cpp in Sources */,
+                               37519A6B0F80E6EB00FED5E8 /* sharedanderbergs.cpp in Sources */,
+                               EBC564190F81479000A5AC46 /* sharedjackknife.cpp in Sources */,
                        );
                        runOnlyForDeploymentPostprocessing = 0;
                };