lines.push_back(linePair(fastaFilePos[i], fastaFilePos[(i+1)]));
if (qfilename != "") { qLines.push_back(linePair(qfileFilePos[i], qfileFilePos[(i+1)])); }
}
lines.push_back(linePair(fastaFilePos[i], fastaFilePos[(i+1)]));
if (qfilename != "") { qLines.push_back(linePair(qfileFilePos[i], qfileFilePos[(i+1)])); }
}