+//**********************************************************************************************************************
+vector<string> SummaryCommand::getValidParameters(){
+ try {
+ string Array[] = {"label","calc","abund","size","outputdir","groupmode","inputdir"};
+ vector<string> myArray (Array, Array+(sizeof(Array)/sizeof(string)));
+ return myArray;
+ }
+ catch(exception& e) {
+ m->errorOut(e, "SummaryCommand", "getValidParameters");
+ exit(1);
+ }
+}
+//**********************************************************************************************************************
+SummaryCommand::SummaryCommand(){
+ try {
+ abort = true; calledHelp = true;
+ vector<string> tempOutNames;
+ outputTypes["summary"] = tempOutNames;
+ }
+ catch(exception& e) {
+ m->errorOut(e, "SummaryCommand", "SummaryCommand");
+ exit(1);
+ }
+}
+//**********************************************************************************************************************
+vector<string> SummaryCommand::getRequiredParameters(){
+ try {
+ vector<string> myArray;
+ return myArray;
+ }
+ catch(exception& e) {
+ m->errorOut(e, "SummaryCommand", "getRequiredParameters");
+ exit(1);
+ }
+}
+//**********************************************************************************************************************
+vector<string> SummaryCommand::getRequiredFiles(){
+ try {
+ string AlignArray[] = {"shared","list","rabund","sabund","or"};
+ vector<string> myArray (AlignArray, AlignArray+(sizeof(AlignArray)/sizeof(string)));
+ return myArray;
+ }
+ catch(exception& e) {
+ m->errorOut(e, "SummaryCommand", "getRequiredFiles");
+ exit(1);
+ }
+}