+//**********************************************************************************************************************
+vector<string> SeqErrorCommand::getValidParameters(){
+ try {
+ string Array[] = {"query", "reference", "name", "threshold", "inputdir", "outputdir"};
+ vector<string> myArray (Array, Array+(sizeof(Array)/sizeof(string)));
+ return myArray;
+ }
+ catch(exception& e) {
+ m->errorOut(e, "SeqErrorCommand", "getValidParameters");
+ exit(1);
+ }
+}
+//**********************************************************************************************************************
+SeqErrorCommand::SeqErrorCommand(){
+ try {
+ abort = true;
+ //initialize outputTypes
+ vector<string> tempOutNames;
+ outputTypes["error"] = tempOutNames;
+ outputTypes["count"] = tempOutNames;
+ }
+ catch(exception& e) {
+ m->errorOut(e, "SeqErrorCommand", "SeqErrorCommand");
+ exit(1);
+ }
+}
+//**********************************************************************************************************************
+vector<string> SeqErrorCommand::getRequiredParameters(){
+ try {
+ string Array[] = {"query","reference"};
+ vector<string> myArray (Array, Array+(sizeof(Array)/sizeof(string)));
+ return myArray;
+ }
+ catch(exception& e) {
+ m->errorOut(e, "SeqErrorCommand", "getRequiredParameters");
+ exit(1);
+ }
+}
+//**********************************************************************************************************************
+vector<string> SeqErrorCommand::getRequiredFiles(){
+ try {
+ vector<string> myArray;
+ return myArray;
+ }
+ catch(exception& e) {
+ m->errorOut(e, "SeqErrorCommand", "getRequiredFiles");
+ exit(1);
+ }
+}