- GlobalData* globaldata;
- vector<int> a, t, g, c, gap;
-
+ string createFilter();
+ int filterSequences();
+ int createProcessesCreateFilter(Filters&, string);
+ int createProcessesRunFilter(string, string);
+ int driverRunFilter(string, string, string, linePair*);
+ int driverCreateFilter(Filters& F, string filename, linePair* line);
+ #ifdef USE_MPI
+ int driverMPIRun(int, int, MPI_File&, MPI_File&, vector<long>&);
+ int MPICreateFilter(int, int, Filters&, MPI_File&, vector<long>&);
+ #endif
+ int setLines(string);
+
+