1 \documentclass[english,12pt]{article}
3 \setmainfont{FreeSerif}
6 \usepackage[letterpaper,left=1in,right=1in,top=1in,bottom=1in,headheight=14pt]{geometry}
10 \usepackage[bf]{caption}
18 %\usepackage{fancyref}
22 \usepackage{adjustbox}
23 \usepackage{longtable}
24 \usepackage{pdflscape}
25 \usepackage[backend=biber,natbib=true,hyperref=true,style=numeric-comp]{biblatex}
26 \addbibresource{references.bib}
27 %\usepackage[noblocks,auth-sc]{authblk}
28 \usepackage[hyperfigures,bookmarks,colorlinks]{hyperref}
29 %\usepackage[hyperfigures,bookmarks,colorlinks,citecolor=black,filecolor=black,linkcolor=black,urlcolor=black]{hyperref}
30 % Floats at end for journals
31 % \usepackage[nolists,figuresfirst,nomarkers,heads,nofighead,notabhead]{endfloat}
32 % \AtBeginFigures{\section*{Figure Legends}\renewcommand{\efloatseparator}{\hbox{}}}
33 % \AtBeginTables{\section*{Tables}\renewcommand{\efloatseparator}{\mbox{}}}
34 \usepackage[nomargin,inline,draft]{fixme}
35 \newcommand{\DLA}[1]{\textcolor{red}{\fxnote{DLA: #1}}}
36 \usepackage[x11names,svgnames]{xcolor}
41 % this package will stretch the font slightly if necessary.
42 \usepackage{microtype}
43 \usepackage{zref-xr,zref-user}
44 \usepackage[capitalize]{cleveref}
45 \newenvironment{narrow}[2]{%
47 \setlength{\topsep}{0pt}%
48 \setlength{\leftmargin}{#1}%
49 \setlength{\rightmargin}{#2}%
50 \setlength{\listparindent}{\parindent}%
51 \setlength{\itemindent}{\parindent}%
52 \setlength{\parsep}{\parskip}}%
55 \newenvironment{paperquote}{%
60 \renewcommand{\textfraction}{0.15}
61 \renewcommand{\topfraction}{0.85}
62 \renewcommand{\bottomfraction}{0.65}
63 \renewcommand{\floatpagefraction}{0.60}
64 %\renewcommand{\baselinestretch}{1.8}
65 \newenvironment{enumerate*}%
67 \setlength{\itemsep}{0pt}%
68 \setlength{\parskip}{0pt}}%
70 \newenvironment{itemize*}%
72 \setlength{\itemsep}{0pt}%
73 \setlength{\parskip}{0pt}}%
80 \setlength{\emergencystretch}{20em}
81 \renewcommand\Affilfont{\itshape\small}
82 \renewcommand\cite[1]{\autocite{#1}}
92 <<load.libraries,echo=FALSE,results="hide",warning=FALSE,message=FALSE,error=FALSE,cache=FALSE>>=
93 opts_chunk$set(dev="cairo_pdf",out.width="\\textwidth",out.height="0.7\\textheight",out.extra="keepaspectratio")
94 #opts_chunk$set(cache=TRUE, autodep=TRUE)
95 options(device = function(file, width = 8, height = 7, ...) {
96 cairo_pdf(tempfile(), width = width, height = height, ...)