1 \documentclass[english,12pt]{article}
3 \setmainfont{FreeSerif}
6 \usepackage[letterpaper,left=1in,right=1in,top=1in,bottom=1in,headheight=14pt]{geometry}
10 \usepackage[bf]{caption}
18 %\usepackage{fancyref}
22 \usepackage{adjustbox}
23 \usepackage{longtable}
24 \usepackage{pdflscape}
25 \usepackage[backend=biber,natbib=true,hyperref=true,style=numeric-comp]{biblatex}
26 \addbibresource{references.bib}
27 %\usepackage[noblocks]{authblk}
28 \usepackage[hyperfigures,bookmarks,colorlinks]{hyperref}
29 %\usepackage[hyperfigures,bookmarks,colorlinks,citecolor=black,filecolor=black,linkcolor=black,urlcolor=black]{hyperref}
30 % Floats at end for journals
31 % \usepackage[nolists,figuresfirst,nomarkers,heads,nofighead,notabhead]{endfloat}
32 % \AtBeginFigures{\section*{Figure Legends}\renewcommand{\efloatseparator}{\hbox{}}}
33 % \AtBeginTables{\section*{Tables}\renewcommand{\efloatseparator}{\mbox{}}}
34 \usepackage[nomargin,inline,draft]{fixme}
35 \newcommand{\DLA}[1]{\textcolor{red}{\fxnote{DLA: #1}}}
36 \usepackage[x11names,svgnames]{xcolor}
40 \usepackage{zref-xr,zref-user}
41 \newenvironment{narrow}[2]{%
43 \setlength{\topsep}{0pt}%
44 \setlength{\leftmargin}{#1}%
45 \setlength{\rightmargin}{#2}%
46 \setlength{\listparindent}{\parindent}%
47 \setlength{\itemindent}{\parindent}%
48 \setlength{\parsep}{\parskip}}%
51 \newenvironment{paperquote}{%
56 \renewcommand{\textfraction}{0.15}
57 \renewcommand{\topfraction}{0.85}
58 \renewcommand{\bottomfraction}{0.65}
59 \renewcommand{\floatpagefraction}{0.60}
60 %\renewcommand{\baselinestretch}{1.8}
61 \newenvironment{enumerate*}%
63 \setlength{\itemsep}{0pt}%
64 \setlength{\parskip}{0pt}}%
66 \newenvironment{itemize*}%
68 \setlength{\itemsep}{0pt}%
69 \setlength{\parskip}{0pt}}%
84 <<load.libraries,echo=FALSE,results="hide",warning=FALSE,message=FALSE,error=FALSE,cache=FALSE>>=
85 opts_chunk$set(dev="cairo_pdf",out.width="\\textwidth",out.height="0.7\\textheight",out.extra="keepaspectratio")
86 #opts_chunk$set(cache=TRUE, autodep=TRUE)
87 options(device = function(file, width = 8, height = 7, ...) {
88 cairo_pdf(tempfile(), width = width, height = height, ...)