1 #ifndef HEATMAPCOMMAND_H
2 #define HEATMAPCOMMAND_H
8 * Created by Sarah Westcott on 3/25/09.
9 * Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
14 #include "command.hpp"
15 #include "inputdata.h"
17 #include "sharedlistvector.h"
19 #include "rabundvector.hpp"
23 class HeatMapCommand : public Command {
26 HeatMapCommand(string);
29 vector<string> getRequiredParameters();
30 vector<string> getValidParameters();
31 vector<string> getRequiredFiles();
32 map<string, vector<string> > getOutputFiles() { return outputTypes; }
37 GlobalData* globaldata;
40 SharedListVector* SharedList;
42 vector<SharedRAbundVector*> lookup;
43 vector<SharedRAbundFloatVector*> lookupFloat;
47 set<string> labels; //holds labels to be used
48 string format, groups, sorted, scale, label, outputDir;
49 vector<string> Groups, outputNames;
50 map<string, vector<string> > outputTypes;