8 ;; The following lines are always needed. Choose your own keys.
9 (add-to-list 'auto-mode-alist '("\\.\\(org\\|org_archive\\|txt\\)$" . org-mode))
12 (global-set-key "\C-cl" 'org-store-link)
13 (global-set-key "\C-ca" 'org-agenda)
14 (global-set-key "\C-cb" 'org-iswitchb)
15 (setq-default org-log-done 'time)
16 (setq-default org-agenda-ndays 5)
18 ;; agenda configuration
19 ;; Do not dim blocked tasks
20 (setq org-agenda-dim-blocked-tasks nil)
22 ;; Compact the block agenda view
23 (setq org-agenda-compact-blocks t)
25 ;; Custom agenda command definitions
26 (setq org-agenda-custom-commands
27 (quote (("N" "Notes" tags "NOTE"
28 ((org-agenda-overriding-header "Notes")
29 (org-tags-match-list-sublevels t)))
30 ("h" "Habits" tags-todo "STYLE=\"habit\""
31 ((org-agenda-overriding-header "Habits")
32 (org-agenda-sorting-strategy
33 '(todo-state-down effort-up category-keep))))
37 ((org-agenda-overriding-header "Tasks to Refile")
38 (org-tags-match-list-sublevels nil)))
39 (tags-todo "-CANCELLED/!"
40 ((org-agenda-overriding-header "Stuck Projects")
41 (org-agenda-skip-function 'bh/skip-non-stuck-projects)
42 (org-agenda-sorting-strategy
44 (tags-todo "-HOLD-CANCELLED/!"
45 ((org-agenda-overriding-header "Projects")
46 (org-agenda-skip-function 'bh/skip-non-projects)
47 (org-tags-match-list-sublevels 'indented)
48 (org-agenda-sorting-strategy
50 (tags-todo "-CANCELLED/!NEXT"
51 ((org-agenda-overriding-header (concat "Project Next Tasks"
52 (if bh/hide-scheduled-and-waiting-next-tasks
54 " (including WAITING and SCHEDULED tasks)")))
55 (org-agenda-skip-function 'bh/skip-projects-and-habits-and-single-tasks)
56 (org-tags-match-list-sublevels t)
57 (org-agenda-todo-ignore-scheduled bh/hide-scheduled-and-waiting-next-tasks)
58 (org-agenda-todo-ignore-deadlines bh/hide-scheduled-and-waiting-next-tasks)
59 (org-agenda-todo-ignore-with-date bh/hide-scheduled-and-waiting-next-tasks)
60 (org-agenda-sorting-strategy
61 '(todo-state-down effort-up category-keep))))
62 (tags-todo "-REFILE-CANCELLED-WAITING-HOLD/!"
63 ((org-agenda-overriding-header (concat "Project Subtasks"
64 (if bh/hide-scheduled-and-waiting-next-tasks
66 " (including WAITING and SCHEDULED tasks)")))
67 (org-agenda-skip-function 'bh/skip-non-project-tasks)
68 (org-agenda-todo-ignore-scheduled bh/hide-scheduled-and-waiting-next-tasks)
69 (org-agenda-todo-ignore-deadlines bh/hide-scheduled-and-waiting-next-tasks)
70 (org-agenda-todo-ignore-with-date bh/hide-scheduled-and-waiting-next-tasks)
71 (org-agenda-sorting-strategy
73 (tags-todo "-REFILE-CANCELLED-WAITING-HOLD/!"
74 ((org-agenda-overriding-header (concat "Standalone Tasks"
75 (if bh/hide-scheduled-and-waiting-next-tasks
77 " (including WAITING and SCHEDULED tasks)")))
78 (org-agenda-skip-function 'bh/skip-project-tasks)
79 (org-agenda-todo-ignore-scheduled bh/hide-scheduled-and-waiting-next-tasks)
80 (org-agenda-todo-ignore-deadlines bh/hide-scheduled-and-waiting-next-tasks)
81 (org-agenda-todo-ignore-with-date bh/hide-scheduled-and-waiting-next-tasks)
82 (org-agenda-sorting-strategy
84 (tags-todo "-CANCELLED+WAITING|HOLD/!"
85 ((org-agenda-overriding-header "Waiting and Postponed Tasks")
86 (org-agenda-skip-function 'bh/skip-stuck-projects)
87 (org-tags-match-list-sublevels nil)
88 (org-agenda-todo-ignore-scheduled t)
89 (org-agenda-todo-ignore-deadlines t)))
91 ((org-agenda-overriding-header "Tasks to Archive")
92 (org-agenda-skip-function 'bh/skip-non-archivable-tasks)
93 (org-tags-match-list-sublevels nil))))
96 ; org mode agenda files
97 (setq org-agenda-files
98 (quote ("~/projects/org-notes/debbugs.org"
99 "~/projects/org-notes/notes.org"
100 "~/projects/org-notes/refile.org"
101 "~/projects/org-notes/diary.org"
102 "~/projects/org-notes/ool.org"
103 "~/projects/org-notes/sndservers.org"
104 "~/projects/org-notes/chaim.org"
105 "~/projects/org-notes/wildman.org"
106 "~/projects/org-notes/uddin.org"
107 "~/projects/org-notes/reviews.org"
108 "~/projects/org-notes/hpcbio.org"
109 "~/projects/org-notes/fh.org")))
111 (set-register ?n (cons 'file "~/projects/org-notes/notes.org"))
112 (set-register ?r (cons 'file "~/projects/org-notes/refile.org"))
113 (set-register ?o (cons 'file "~/projects/org-notes/ool.org"))
114 (set-register ?s (cons 'file "~/projects/org-notes/sndservers.org"))
115 (set-register ?c (cons 'file "~/projects/org-notes/chaim.org"))
116 (set-register ?w (cons 'file "~/projects/org-notes/wildman.org"))
117 (set-register ?u (cons 'file "~/projects/org-notes/uddin.org"))
118 (set-register ?R (cons 'file "~/projects/reviews/reviews.org"))
119 (set-register ?d (cons 'file "~/projects/org-notes/diary.org"))
121 (setq org-global-properties '(("Effort_ALL 0 0:10 0:30 1:00 2:00 3:00 4:00 5:00 6:00 7:00")))
122 (setq org-columns-default-format "%40ITEM(Task) %6Effort{:} %CLOCKSUM %PRIORITY %TODO %13SCHEDULED %13DEADLINE %TAGS")
124 (setq org-default-notes-file "~/projects/org-notes/notes.org")
125 (setq org-id-link-to-org-use-id t)
126 (setq org-capture-templates ;; mail-specific note template, identified by "m"
127 '(("m" "Mail" entry (file+headline "~/projects/org-notes/refile.org" "Mail")
128 "* %?\n\n Source: %u, %c\n %i")
129 ("t" "todo" entry (file "~/projects/org-notes/refile.org")
130 "* TODO %?\n :PROPERTIES:\n :END:\n :LOGBOOK:\n :END:\n%U\n%a\n" :clock-in t :clock-resume t)
131 ("r" "respond" entry (file "~/projects/org-notes/refile.org")
132 "* NEXT Respond to %:from on %:subject\nSCHEDULED: %t\n%U\n%a\n" :clock-in t :clock-resume t :immediate-finish t)
133 ("n" "note" entry (file "~/projects/org-notes/refile.org")
134 "* %? :NOTE:\n%U\n%a\n" :clock-in t :clock-resume t)
135 ("s" "schedule" entry (file "~/projects/org-notes/refile.org")
136 "* %? :cal:\n%^{scheduled:}t\n%U\n%a\n" :clock-in t :clock-resume t)
137 ("j" "Journal" entry (file+datetree "~/projects/org-notes/diary.org")
138 "* %?\n%U\n" :clock-in t :clock-resume t)
139 ("w" "org-protocol" entry (file "~/projects/org-notes/refile.org")
140 "* TODO Review %c\n%U\n" :immediate-finish t)
141 ("M" "Meeting" entry (file "~/projects/org-notes/refile.org")
142 "* MEETING with %? :MEETING:\n%U" :clock-in t :clock-resume t)
143 ("S" "Seminar" entry (file "~/projects/org-notes/refile.org")
144 "* SEMINAR notes %? :SEMINAR:\n%U" :clock-in t :clock-resume t)
145 ("P" "Paper to read" entry (file+headline "~/projects/research/papers_to_read.org" "Refile")
146 "* TODO Get/Read %? \n%U" :clock-in t :clock-resume t)
147 ("p" "Phone call" entry (file "~/projects/org-notes/refile.org")
148 "* PHONE %? :PHONE:\n%U" :clock-in t :clock-resume t)
149 ("J" "job" entry (file "~/projects/org-notes/refile.org")
150 "* TODO Apply for %a%? :job:\nSCHEDULED: %(format-time-string \"<%Y-%m-%d 17:00-17:30>\")\n%U\n%a\n" :clock-in t :clock-resume t)
151 ("h" "Habit" entry (file "~/projects/org-notes/refile.org")
152 "* NEXT %?\n%U\n%a\nSCHEDULED: %(format-time-string \"<%Y-%m-%d .+1d/3d>\")\n:PROPERTIES:\n:STYLE: habit\n:REPEAT_TO_STATE: NEXT\n:END:\n%a\n")
156 ;; Remove empty LOGBOOK drawers on clock out
157 (defun bh/remove-empty-drawer-on-clock-out ()
160 (beginning-of-line 0)
161 (org-remove-empty-drawer-at (point))))
163 (defun my/org-add-id ()
166 (if (org-current-level)
174 ; org mode configuration from http://doc.norang.ca/org-mode.html
175 ;; Custom Key Bindings
176 (global-set-key (kbd "<f12>") 'org-agenda)
177 (global-set-key (kbd "<f5>") 'bh/org-todo)
178 (global-set-key (kbd "<S-f5>") 'bh/widen)
179 (global-set-key (kbd "<f7>") 'bh/set-truncate-lines)
180 (global-set-key (kbd "<f8>") 'org-cycle-agenda-files)
181 (global-set-key (kbd "<f9> <f9>") 'bh/show-org-agenda)
182 (global-set-key (kbd "<f9> b") 'bbdb)
183 (global-set-key (kbd "<f9> c") 'calendar)
184 (global-set-key (kbd "<f9> f") 'boxquote-insert-file)
185 (global-set-key (kbd "<f9> h") 'bh/hide-other)
186 (global-set-key (kbd "<f9> n") 'bh/toggle-next-task-display)
187 (global-set-key (kbd "<f9> w") 'widen)
189 ; change the outline mode prefix from C-c @ to C-c C-2
190 (setq outline-minor-mode-prefix "C-c C-2")
191 ;(add-hook 'outline-minor-mode-hook
192 ; (lambda () (local-set-key (kbd "C-c C-2")
193 ; outline-mode-prefix-map)))
195 (global-set-key (kbd "<f9> I") 'bh/punch-in)
196 (global-set-key (kbd "<f9> O") 'bh/punch-out)
198 (global-set-key (kbd "<f9> o") 'bh/make-org-scratch)
200 (global-set-key (kbd "<f9> r") 'boxquote-region)
201 (global-set-key (kbd "<f9> s") 'bh/switch-to-scratch)
203 (global-set-key (kbd "<f9> t") 'bh/insert-inactive-timestamp)
204 (global-set-key (kbd "<f9> T") 'bh/toggle-insert-inactive-timestamp)
206 (global-set-key (kbd "<f9> v") 'visible-mode)
207 (global-set-key (kbd "<f9> l") 'org-toggle-link-display)
208 (global-set-key (kbd "<f9> SPC") 'bh/clock-in-last-task)
209 (global-set-key (kbd "C-<f9>") 'previous-buffer)
210 (global-set-key (kbd "M-<f9>") 'org-toggle-inline-images)
211 (global-set-key (kbd "C-x n r") 'narrow-to-region)
212 (global-set-key (kbd "C-<f10>") 'next-buffer)
213 (global-set-key (kbd "<f11>") 'org-clock-goto)
214 (global-set-key (kbd "C-<f11>") 'org-clock-in)
215 (global-set-key (kbd "C-s-<f12>") 'bh/save-then-publish)
216 (global-set-key (kbd "C-c c") 'org-capture)
218 (defun bh/hide-other ()
221 (org-back-to-heading 'invisible-ok)
227 (defun bh/set-truncate-lines ()
228 "Toggle value of truncate-lines and refresh window display."
230 (setq truncate-lines (not truncate-lines))
231 ;; now refresh window display (an idiom from simple.el):
233 (set-window-start (selected-window)
234 (window-start (selected-window)))))
236 (defun bh/make-org-scratch ()
238 (find-file "/tmp/publish/scratch.org")
239 (gnus-make-directory "/tmp/publish"))
241 (defun bh/switch-to-scratch ()
243 (switch-to-buffer "*scratch*"))
245 (setq org-use-fast-todo-selection t)
246 (setq org-treat-S-cursor-todo-selection-as-state-change nil)
248 (setq org-todo-keywords
249 (quote ((sequence "TODO(t)" "NEXT(n)" "|" "DONE(d)")
250 (sequence "WAITING(w@/!)" "HOLD(h@/!)" "|" "CANCELLED(c@/!)" "PHONE" "MEETING"))))
252 (setq org-todo-keyword-faces
253 (quote (("TODO" :foreground "red" :weight bold)
254 ("NEXT" :foreground "blue" :weight bold)
255 ("DONE" :foreground "forest green" :weight bold)
256 ("WAITING" :foreground "orange" :weight bold)
257 ("HOLD" :foreground "magenta" :weight bold)
258 ("CANCELLED" :foreground "forest green" :weight bold)
259 ("MEETING" :foreground "forest green" :weight bold)
260 ("PHONE" :foreground "forest green" :weight bold))))
262 (setq org-todo-state-tags-triggers
263 (quote (("CANCELLED" ("CANCELLED" . t))
264 ("WAITING" ("WAITING" . t))
265 ("HOLD" ("WAITING") ("HOLD" . t))
266 (done ("WAITING") ("HOLD"))
267 ("TODO" ("WAITING") ("CANCELLED") ("HOLD"))
268 ("NEXT" ("WAITING") ("CANCELLED") ("HOLD"))
269 ("DONE" ("WAITING") ("CANCELLED") ("HOLD")))))
273 ; (add-hook 'org-clock-out-hook 'bh/remove-empty-drawer-on-clock-out 'append)
274 ; add ids on creation of nodes
275 (add-hook 'org-capture-prepare-finalize-hook 'my/org-add-id)
276 ; create function to create headlines in file. This comes from
277 ; http://stackoverflow.com/questions/13340616/assign-ids-to-every-entry-in-org-mode
278 (defun my/org-add-ids-to-headlines-in-file ()
279 "Add ID properties to all headlines in the current file which
280 do not already have one."
282 (org-map-entries 'org-id-get-create))
283 ; if we wanted to do this to every buffer, do the following:
284 ; (add-hook 'org-mode-hook
286 ; (add-hook 'before-save-hook 'my/org-add-ids-to-headlines-in-file nil 'local)))
289 ; resolve clocks after 10 minutes of idle; use xprintidle
290 ; (setq org-clock-idle-time 10)
291 ; (setq org-clock-x11idle-program-name "xprintidle")
293 ; this is from http://doc.norang.ca/org-mode.html#Capture
294 ; use C-M-r for org mode capture
295 (global-set-key (kbd "C-M-r") 'org-capture)
297 ; Targets include this file and any file contributing to the agenda - up to 9 levels deep
298 (setq org-refile-targets (quote ((nil :maxlevel . 9)
299 (org-agenda-files :maxlevel . 9))))
301 ; Use full outline paths for refile targets - we file directly with IDO
302 (setq org-refile-use-outline-path t)
304 ; Targets complete directly with IDO
305 (setq org-outline-path-complete-in-steps nil)
307 ; Allow refile to create parent tasks with confirmation
308 (setq org-refile-allow-creating-parent-nodes (quote confirm))
310 ; ; Use IDO for both buffer and file completion and ido-everywhere to t
311 ; (setq org-completion-use-ido t)
312 ; (setq ido-everywhere t)
313 ; (setq ido-max-directory-size 100000)
314 ; (ido-mode (quote both))
315 ; ; Use the current window when visiting files and buffers with ido
316 ; (setq ido-default-file-method 'selected-window)
317 ; (setq ido-default-buffer-method 'selected-window)
318 ; ; Use the current window for indirect buffer display
319 ; (setq org-indirect-buffer-display 'current-window)
323 ; Exclude DONE state tasks from refile targets
324 (defun bh/verify-refile-target ()
325 "Exclude todo keywords with a done state from refile targets"
326 (not (member (nth 2 (org-heading-components)) org-done-keywords)))
328 (setq org-refile-target-verify-function 'bh/verify-refile-target)
330 ;; ensure that emacsclient will show just the note to be edited when invoked
331 ;; from Mutt, and that it will shut down emacsclient once finished;
332 ;; fallback to legacy behavior when not invoked via org-protocol.
333 (require 'org-protocol)
334 ; (add-hook 'org-capture-mode-hook 'delete-other-windows)
335 (setq my-org-protocol-flag nil)
336 (defadvice org-capture-finalize (after delete-frame-at-end activate)
337 "Delete frame at remember finalization"
338 (progn (if my-org-protocol-flag (delete-frame))
339 (setq my-org-protocol-flag nil)))
340 (defadvice org-capture-refile (around delete-frame-after-refile activate)
341 "Delete frame at remember refile"
342 (if my-org-protocol-flag
344 (setq my-org-protocol-flag nil)
349 (defadvice org-capture-kill (after delete-frame-at-end activate)
350 "Delete frame at remember abort"
351 (progn (if my-org-protocol-flag (delete-frame))
352 (setq my-org-protocol-flag nil)))
353 (defadvice org-protocol-capture (before set-org-protocol-flag activate)
354 (setq my-org-protocol-flag t))
356 (defadvice org-insert-todo-heading (after dla/create-id activate)
361 (add-to-list 'org-modules 'org-habit)
363 ; this comes from http://upsilon.cc/~zack/blog/posts/2010/02/integrating_Mutt_with_Org-mode/
364 (defun open-mail-in-mutt (message)
365 "Open a mail message in Mutt, using an external terminal.
367 Message can be specified either by a path pointing inside a
368 Maildir, or by Message-ID."
369 (interactive "MPath or Message-ID: ")
371 (format "faf xterm -e \"%s %s\""
372 (substitute-in-file-name "$HOME/bin/mutt_open") message)))
374 ;; add support for "mutt:ID" links
375 (org-add-link-type "mutt" 'open-mail-in-mutt)
377 (defun my-org-mode-setup ()
378 (load-library "reftex")
379 (and (buffer-file-name)
380 (file-exists-p (buffer-file-name))
383 (reftex-set-cite-format
384 '((?b . "[[bib:%l][%l-bib]]")
385 (?n . "[[notes:%l][%l-notes]]")
387 (?h . "*** %t\n:PROPERTIES:\n:Custom_ID: %l\n:END:\n[[papers:%l][%l xoj]] [[papers-pdf:%l][pdf]]")))
389 (define-key org-mode-map (kbd "C-c )") 'reftex-citation)
390 (define-key org-mode-map (kbd "C-c [") 'reftex-citation)
391 (define-key org-mode-map (kbd "C-c (") 'org-mode-reftex-search)
392 (define-key org-mode-map (kbd "C-c 0") 'reftex-view-crossref)
394 (add-hook 'org-mode-hook 'my-org-mode-setup)
396 (defun org-mode-reftex-search ()
398 (org-open-link-from-string (format "[[notes:%s]]" (first (reftex-citation t)))))
400 (defun open-research-paper (bibtexkey)
401 "Open a paper by bibtex key"
402 (interactive "bibtex key: ")
405 (substitute-in-file-name "$HOME/bin/bibtex_to_paper") bibtexkey)))
406 (org-add-link-type "papers" 'open-research-paper)
407 (defun open-research-paper-pdf (bibtexkey)
408 "Open a paper pdf by bibtex key"
409 (interactive "bibtex key: ")
411 (format "%s -p evince %s"
412 (substitute-in-file-name "$HOME/bin/bibtex_to_paper") bibtexkey)))
413 (org-add-link-type "papers-pdf" 'open-research-paper-pdf)
415 (add-to-list 'org-link-abbrev-alist
417 "~/projects/research/paper_notes.org::#%s"))
419 ; I pretty much always want hiearchical checkboxes
420 (setq org-hierachical-checkbox-statistics nil)
422 ;; Add \begin{equation}\end{equation} templates to the org mode easy templates
423 (add-to-list 'org-structure-template-alist
424 '("E" "\\begin{equation}\n?\n\\end{equation}"))
427 ;; http://www-public.it-sudparis.eu/~berger_o/weblog/2012/03/23/how-to-manage-and-export-bibliographic-notesrefs-in-org-mode/
428 (defun my-rtcite-export-handler (path desc format)
429 (message "my-rtcite-export-handler is called : path = %s, desc = %s, format = %s" path desc format)
430 (let* ((search (when (string-match "::#?\\(.+\\)\\'" path)
431 (match-string 1 path)))
432 (path (substring path 0 (match-beginning 0))))
433 (cond ((eq format 'latex)
435 (equal 0 (search "rtcite:" desc)))
436 (format "\\cite{%s}" search)
437 (format "\\cite[%s]{%s}" desc search))))))
439 (org-add-link-type "rtcite"
441 'my-rtcite-export-handler)
444 (setq-default org-mobile-directory "/rzlab.ucr.edu:/sites/dav.donarmstrong.com/root/org/")
445 (when (string= system-name "rzlab.ucr.edu")
446 (setq-default org-mobile-directory "/sites/dav.donarmstrong.com/root/org/"))
447 (setq-default org-directory "/home/don/org-mode/")
448 (setq-default org-mobile-inbox-for-pull "/home/don/org-mode/from-mobile.org")
450 ;; org mode ical export
451 (setq org-icalendar-timezone "America/Los_Angeles")
452 (setq org-icalendar-use-scheduled '(todo-start event-if-todo))
453 ;; we already add the id manually
454 ;; (setq org-icalendar-store-UID t)
457 (org-babel-do-load-languages
458 'org-babel-load-languages
465 ;; use graphviz-dot for dot things
466 (add-to-list 'org-src-lang-modes '("dot" . graphviz-dot))
467 ;; org-babel-by-backend
468 (defmacro org-babel-by-backend (&rest body)
469 `(case (if (boundp 'backend)
470 (org-export-backend-name backend)
473 (defun my/fix-inline-images ()
474 (when org-inline-image-overlays
475 (org-redisplay-inline-images)))
477 (add-hook 'org-babel-after-execute-hook
478 'my/fix-inline-images)
481 ;; ;; stolen from http://kieranhealy.org/esk/kjhealy.html
482 ;; (require 'org-latex)
483 ;; ;; Choose either listings or minted for exporting source code blocks.
484 ;; ;; Using minted (as here) requires pygments be installed. To use the
485 ;; ;; default listings package instead, use
486 ;; ;; (setq org-latex-listings t)
487 ;; ;; and change references to "minted" below to "listings"
488 ;; ; (setq org-latex-listings 'minted)
490 ;; ;; default settings for minted code blocks
491 ;; (setq org-latex-minted-options
492 ;; '(;("frame" "single")
493 ;; ("bgcolor" "bg") ; bg will need to be defined in the preamble of your document. It's defined in org-preamble-pdflatex.sty and org-preamble-xelatex.sty below.
494 ;; ("fontsize" "\\small")
496 ;; ;; turn off the default toc behavior; deal with it properly in headers to files.
497 ;; (defun org-latex-no-toc (depth)
499 ;; (format "%% Org-mode is exporting headings to %s levels.\n"
501 ;; (setq org-latex-format-toc-function 'org-latex-no-toc)
504 (add-to-list 'org-latex-classes
506 "\\documentclass[11pt,oneside,article]{memoir}\n"
507 ("\\section{%s}" . "\\section*{%s}")
508 ("\\subsection{%s}" . "\\subsection*{%s}")
509 ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
510 ("\\paragraph{%s}" . "\\paragraph*{%s}")
511 ("\\subparagraph{%s}" . "\\subparagraph*{%s}")))
513 (setq org-beamer-outline-frame-options "")
515 (add-to-list 'org-latex-classes
517 "\\documentclass[ignorenonframetext]{beamer}
518 [NO-DEFAULT-PACKAGES]
521 ("\\section{%s}" . "\\section*{%s}")
522 ("\\subsection{%s}" . "\\subsection*{%s}")
523 ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
524 ("\\paragraph{%s}" . "\\paragraph*{%s}")
525 ("\\subparagraph{%s}" . "\\subparagraph*{%s}")))
527 (add-to-list 'org-latex-classes
529 "\\documentclass[11pt,oneside]{memoir}\n"
530 ("\\chapter{%s}" . "\\chapter*{%s}")
531 ("\\section{%s}" . "\\section*{%s}")
532 ("\\subsection{%s}" . "\\subsection*{%s}")
533 ("\\subsubsection{%s}" . "\\subsubsection*{%s}")))
535 (add-to-list 'org-latex-classes
537 "\\documentclass[11pt]{letter}
538 [NO-DEFAULT-PACKAGES]
541 ("\\section{%s}" . "\\section*{%s}")
542 ("\\subsection{%s}" . "\\subsection*{%s}")
543 ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
544 ("\\paragraph{%s}" . "\\paragraph*{%s}")
545 ("\\subparagraph{%s}" . "\\subparagraph*{%s}")))
547 ;; Originally taken from Bruno Tavernier: http://thread.gmane.org/gmane.emacs.orgmode/31150/focus=31432
548 ;; but adapted to use latexmk 4.22 or higher.
549 (setq org-latex-pdf-process '("latexmk -pdflatex=xelatex -bibtex -use-make -pdf %f"))
551 ;; Default packages included in /every/ tex file, latex, pdflatex or xelatex
552 (setq org-latex-default-packages-alist
554 (setq org-latex-packages-alist
564 (defun org-create-formula--latex-header ()
565 "Return LaTeX header appropriate for previewing a LaTeX snippet."
566 (let ((info (org-combine-plists (org-export--get-global-options
567 (org-export-get-backend 'latex))
568 (org-export--get-inbuffer-options
569 (org-export-get-backend 'latex)))))
570 (org-latex-guess-babel-language
571 (org-latex-guess-inputenc
572 (org-splice-latex-header
573 org-format-latex-header
574 org-latex-default-packages-alist
576 (plist-get info :latex-header)))
580 ; support ignoring headers in org mode export to latex
581 ; from http://article.gmane.org/gmane.emacs.orgmode/67692
582 (defadvice org-latex-headline (around my-latex-skip-headlines
583 (headline contents info) activate)
584 (if (member "ignoreheading" (org-element-property :tags headline))
585 (setq ad-return-value contents)
588 ;; keep latex logfiles
590 (setq org-latex-remove-logfiles nil)
593 (defun bh/is-project-p ()
594 "Any task with a todo keyword subtask"
598 (subtree-end (save-excursion (org-end-of-subtree t)))
599 (is-a-task (member (nth 2 (org-heading-components)) org-todo-keywords-1)))
602 (while (and (not has-subtask)
603 (< (point) subtree-end)
604 (re-search-forward "^\*+ " subtree-end t))
605 (when (member (org-get-todo-state) org-todo-keywords-1)
606 (setq has-subtask t))))
607 (and is-a-task has-subtask))))
609 (defun bh/is-project-subtree-p ()
610 "Any task with a todo keyword that is in a project subtree.
611 Callers of this function already widen the buffer view."
612 (let ((task (save-excursion (org-back-to-heading 'invisible-ok)
615 (bh/find-project-task)
616 (if (equal (point) task)
620 (defun bh/is-task-p ()
621 "Any task with a todo keyword and no subtask"
625 (subtree-end (save-excursion (org-end-of-subtree t)))
626 (is-a-task (member (nth 2 (org-heading-components)) org-todo-keywords-1)))
629 (while (and (not has-subtask)
630 (< (point) subtree-end)
631 (re-search-forward "^\*+ " subtree-end t))
632 (when (member (org-get-todo-state) org-todo-keywords-1)
633 (setq has-subtask t))))
634 (and is-a-task (not has-subtask)))))
636 (defun bh/is-subproject-p ()
637 "Any task which is a subtask of another project"
638 (let ((is-subproject)
639 (is-a-task (member (nth 2 (org-heading-components)) org-todo-keywords-1)))
641 (while (and (not is-subproject) (org-up-heading-safe))
642 (when (member (nth 2 (org-heading-components)) org-todo-keywords-1)
643 (setq is-subproject t))))
644 (and is-a-task is-subproject)))
646 (defun bh/list-sublevels-for-projects-indented ()
647 "Set org-tags-match-list-sublevels so when restricted to a subtree we list all subtasks.
648 This is normally used by skipping functions where this variable is already local to the agenda."
649 (if (marker-buffer org-agenda-restrict-begin)
650 (setq org-tags-match-list-sublevels 'indented)
651 (setq org-tags-match-list-sublevels nil))
654 (defun bh/list-sublevels-for-projects ()
655 "Set org-tags-match-list-sublevels so when restricted to a subtree we list all subtasks.
656 This is normally used by skipping functions where this variable is already local to the agenda."
657 (if (marker-buffer org-agenda-restrict-begin)
658 (setq org-tags-match-list-sublevels t)
659 (setq org-tags-match-list-sublevels nil))
662 (defvar bh/hide-scheduled-and-waiting-next-tasks t)
664 (defun bh/toggle-next-task-display ()
666 (setq bh/hide-scheduled-and-waiting-next-tasks (not bh/hide-scheduled-and-waiting-next-tasks))
667 (when (equal major-mode 'org-agenda-mode)
669 (message "%s WAITING and SCHEDULED NEXT Tasks" (if bh/hide-scheduled-and-waiting-next-tasks "Hide" "Show")))
671 (defun bh/skip-stuck-projects ()
672 "Skip trees that are not stuck projects"
675 (let ((next-headline (save-excursion (or (outline-next-heading) (point-max)))))
676 (if (bh/is-project-p)
677 (let* ((subtree-end (save-excursion (org-end-of-subtree t)))
681 (while (and (not has-next) (< (point) subtree-end) (re-search-forward "^\\*+ NEXT " subtree-end t))
682 (unless (member "WAITING" (org-get-tags-at))
686 next-headline)) ; a stuck project, has subtasks but no next task
689 (defun bh/skip-non-stuck-projects ()
690 "Skip trees that are not stuck projects"
691 ;; (bh/list-sublevels-for-projects-indented)
694 (let ((next-headline (save-excursion (or (outline-next-heading) (point-max)))))
695 (if (bh/is-project-p)
696 (let* ((subtree-end (save-excursion (org-end-of-subtree t)))
700 (while (and (not has-next) (< (point) subtree-end) (re-search-forward "^\\*+ NEXT " subtree-end t))
701 (unless (member "WAITING" (org-get-tags-at))
705 nil)) ; a stuck project, has subtasks but no next task
708 (defun bh/skip-non-projects ()
709 "Skip trees that are not projects"
710 ;; (bh/list-sublevels-for-projects-indented)
711 (if (save-excursion (bh/skip-non-stuck-projects))
714 (let ((subtree-end (save-excursion (org-end-of-subtree t))))
718 ((and (bh/is-project-subtree-p) (not (bh/is-task-p)))
722 (save-excursion (org-end-of-subtree t))))
724 (defun bh/skip-project-trees-and-habits ()
725 "Skip trees that are projects"
728 (let ((subtree-end (save-excursion (org-end-of-subtree t))))
737 (defun bh/skip-projects-and-habits-and-single-tasks ()
738 "Skip trees that are projects, tasks that are habits, single non-project tasks"
741 (let ((next-headline (save-excursion (or (outline-next-heading) (point-max)))))
745 ((and bh/hide-scheduled-and-waiting-next-tasks
746 (member "WAITING" (org-get-tags-at)))
750 ((and (bh/is-task-p) (not (bh/is-project-subtree-p)))
755 (defun bh/skip-project-tasks-maybe ()
756 "Show tasks related to the current restriction.
757 When restricted to a project, skip project and sub project tasks, habits, NEXT tasks, and loose tasks.
758 When not restricted, skip project and sub-project tasks, habits, and project related tasks."
761 (let* ((subtree-end (save-excursion (org-end-of-subtree t)))
762 (next-headline (save-excursion (or (outline-next-heading) (point-max))))
763 (limit-to-project (marker-buffer org-agenda-restrict-begin)))
769 ((and (not limit-to-project)
770 (bh/is-project-subtree-p))
772 ((and limit-to-project
773 (bh/is-project-subtree-p)
774 (member (org-get-todo-state) (list "NEXT")))
779 (defun bh/skip-project-tasks ()
780 "Show non-project tasks.
781 Skip project and sub-project tasks, habits, and project related tasks."
784 (let* ((subtree-end (save-excursion (org-end-of-subtree t))))
790 ((bh/is-project-subtree-p)
795 (defun bh/skip-non-project-tasks ()
797 Skip project and sub-project tasks, habits, and loose non-project tasks."
800 (let* ((subtree-end (save-excursion (org-end-of-subtree t)))
801 (next-headline (save-excursion (or (outline-next-heading) (point-max)))))
807 ((and (bh/is-project-subtree-p)
808 (member (org-get-todo-state) (list "NEXT")))
810 ((not (bh/is-project-subtree-p))
815 (defun bh/skip-projects-and-habits ()
816 "Skip trees that are projects and tasks that are habits"
819 (let ((subtree-end (save-excursion (org-end-of-subtree t))))
828 (defun bh/skip-non-subprojects ()
829 "Skip trees that are not projects"
830 (let ((next-headline (save-excursion (outline-next-heading))))
831 (if (bh/is-subproject-p)
835 ;; Resume clocking task when emacs is restarted
836 (org-clock-persistence-insinuate)
838 ;; Show lot of clocking history so it's easy to pick items off the C-F11 list
839 (setq org-clock-history-length 23)
840 ;; Resume clocking task on clock-in if the clock is open
841 (setq org-clock-in-resume t)
842 ;; Change tasks to NEXT when clocking in
843 (setq org-clock-in-switch-to-state 'bh/clock-in-to-next)
844 ;; (setq org-clock-in-switch-to-state "NEXT")
845 ;; Separate drawers for clocking and logs
846 (setq org-drawers (quote ("PROPERTIES" "LOGBOOK")))
847 ;; Save clock data and state changes and notes in the LOGBOOK drawer
848 (setq org-clock-into-drawer t)
849 (setq org-log-into-drawer t)
850 ;; Sometimes I change tasks I'm clocking quickly - this removes clocked tasks with 0:00 duration
851 (setq org-clock-out-remove-zero-time-clocks t)
852 ;; Clock out when moving task to a done state
853 (setq org-clock-out-when-done t)
854 ;; Save the running clock and all clock history when exiting Emacs, load it on startup
855 (setq org-clock-persist t)
856 ;; Do not prompt to resume an active clock
857 (setq org-clock-persist-query-resume nil)
858 ;; Enable auto clock resolution for finding open clocks
859 (setq org-clock-auto-clock-resolution (quote when-no-clock-is-running))
860 ;; Include current clocking task in clock reports
861 (setq org-clock-report-include-clocking-task t)
863 ;; the cache seems to be broken
864 (setq org-element-use-cache nil)
866 (defvar bh/keep-clock-running nil)
868 (defun bh/clock-in-to-next (kw)
869 "Switch a task from TODO to NEXT when clocking in.
870 Skips capture tasks, projects, and subprojects.
871 Switch projects and subprojects from NEXT back to TODO"
872 (when (not (and (boundp 'org-capture-mode) org-capture-mode))
874 ((and (member (org-get-todo-state) (list "TODO"))
877 ((and (member (org-get-todo-state) (list "NEXT"))
881 (defun bh/find-project-task ()
882 "Move point to the parent (project) task if any"
885 (let ((parent-task (save-excursion (org-back-to-heading 'invisible-ok) (point))))
886 (while (org-up-heading-safe)
887 (when (member (nth 2 (org-heading-components)) org-todo-keywords-1)
888 (setq parent-task (point))))
889 (goto-char parent-task)
892 (defun bh/punch-in (arg)
893 "Start continuous clocking and set the default task to the
894 selected task. If no task is selected set the Organization task
895 as the default task."
897 (setq bh/keep-clock-running t)
898 (if (equal major-mode 'org-agenda-mode)
900 ;; We're in the agenda
902 (let* ((marker (org-get-at-bol 'org-hd-marker))
903 (tags (org-with-point-at marker (org-get-tags-at))))
904 (if (and (eq arg 4) tags)
905 (org-agenda-clock-in '(16))
906 (bh/clock-in-organization-task-as-default)))
908 ;; We are not in the agenda
912 ; Find the tags on the current task
913 (if (and (equal major-mode 'org-mode) (not (org-before-first-heading-p)) (eq arg 4))
915 (bh/clock-in-organization-task-as-default)))))
917 (defun bh/punch-out ()
919 (setq bh/keep-clock-running nil)
920 (when (org-clock-is-active)
922 (org-agenda-remove-restriction-lock))
924 (defun bh/clock-in-default-task ()
926 (org-with-point-at org-clock-default-task
929 (defun bh/clock-in-parent-task ()
930 "Move point to the parent (project) task if any and clock in"
935 (while (and (not parent-task) (org-up-heading-safe))
936 (when (member (nth 2 (org-heading-components)) org-todo-keywords-1)
937 (setq parent-task (point))))
939 (org-with-point-at parent-task
941 (when bh/keep-clock-running
942 (bh/clock-in-default-task)))))))
944 (defvar bh/organization-task-id "e22cb8bf-07c7-408b-8f60-ff3aadac95e4")
946 (defun bh/clock-in-organization-task-as-default ()
948 (org-with-point-at (org-id-find bh/organization-task-id 'marker)
949 (org-clock-in '(16))))
951 (defun bh/clock-out-maybe ()
952 (when (and bh/keep-clock-running
953 (not org-clock-clocking-in)
954 (marker-buffer org-clock-default-task)
955 (not org-clock-resolving-clocks-due-to-idleness))
956 (bh/clock-in-parent-task)))
958 ; (add-hook 'org-clock-out-hook 'bh/clock-out-maybe 'append)
961 (defun bh/clock-in-task-by-id (id)
962 "Clock in a task by id"
963 (org-with-point-at (org-id-find id 'marker)
966 (defun bh/clock-in-last-task (arg)
967 "Clock in the interrupted task if there is one
968 Skip the default task and get the next one.
969 A prefix arg forces clock in of the default task."
971 (let ((clock-in-to-task
973 ((eq arg 4) org-clock-default-task)
974 ((and (org-clock-is-active)
975 (equal org-clock-default-task (cadr org-clock-history)))
976 (caddr org-clock-history))
977 ((org-clock-is-active) (cadr org-clock-history))
978 ((equal org-clock-default-task (car org-clock-history)) (cadr org-clock-history))
979 (t (car org-clock-history)))))
981 (org-with-point-at clock-in-to-task
982 (org-clock-in nil))))
985 (defun org-export-to-ods ()
987 (let ((csv-file "data.csv"))
988 (org-table-export csv-file "orgtbl-to-csv")
989 (org-odt-convert csv-file "ods" 'open)))
991 ; allow for zero-width-space to be a break in regexp too
992 ; (setcar org-emphasis-regexp-components " [:space:] \t('\"{")
993 ; (setcar (nthcdr 1 org-emphasis-regexp-components) " [:space:]- \t.,:!?;'\")}\\")
994 ; (org-set-emph-re 'org-emphasis-regexp-components org-emphasis-regexp-components)
996 ;; support inserting screen shots
997 (defun my/org-insert-screenshot ()
998 "Take a screenshot into a time stamped unique-named file in the
999 same directory as the org-buffer and insert a link to this file."
1001 (defvar my/org-insert-screenshot/filename)
1002 (setq my/org-insert-screenshot/filename
1004 "Screenshot to insert: "
1006 (concat (buffer-file-name) "_" (format-time-string "%Y%m%d_%H%M%S") ".png")
1009 (call-process "import" nil nil nil my/org-insert-screenshot/filename)
1010 (insert (concat "[[" my/org-insert-screenshot/filename "]]"))
1011 (org-display-inline-images))
1013 (defun my/fix-inline-images ()
1014 (when org-inline-image-overlays
1015 (org-redisplay-inline-images)))
1017 (add-hook 'org-babel-after-execute-hook 'my/fix-inline-images)
1019 ; from http://orgmode.org/Changes.html
1020 (defun my/org-repair-property-drawers ()
1021 "Fix properties drawers in current buffer.
1022 Ignore non Org buffers."
1024 (when (eq major-mode 'org-mode)
1025 (org-with-wide-buffer
1026 (goto-char (point-min))
1027 (let ((case-fold-search t)
1028 (inline-re (and (featurep 'org-inlinetask)
1029 (concat (org-inlinetask-outline-regexp)
1033 (unless (and inline-re (org-looking-at-p inline-re))
1035 (let ((end (save-excursion (outline-next-heading) (point))))
1037 (when (org-looking-at-p org-planning-line-re) (forward-line))
1038 (when (and (< (point) end)
1039 (not (org-looking-at-p org-property-drawer-re))
1041 (and (re-search-forward org-property-drawer-re end t)
1042 (eq (org-element-type
1043 (save-match-data (org-element-at-point)))
1045 (insert (delete-and-extract-region
1047 (min (1+ (match-end 0)) end)))
1048 (unless (bolp) (insert "\n"))))))))))))
1050 (provide 'org-mode-configuration)