8 ;; The following lines are always needed. Choose your own keys.
9 (add-to-list 'auto-mode-alist '("\\.\\(org\\|org_archive\\|txt\\)$" . org-mode))
12 (global-set-key "\C-cl" 'org-store-link)
13 (global-set-key "\C-ca" 'org-agenda)
14 (global-set-key "\C-cb" 'org-iswitchb)
15 (setq-default org-log-done 'time)
16 (setq-default org-agenda-ndays 5)
18 ;; agenda configuration
19 ;; Do not dim blocked tasks
20 (setq org-agenda-dim-blocked-tasks nil)
22 ;; Compact the block agenda view
23 (setq org-agenda-compact-blocks t)
25 ;; Custom agenda command definitions
26 (setq org-agenda-custom-commands
27 (quote (("N" "Notes" tags "NOTE"
28 ((org-agenda-overriding-header "Notes")
29 (org-tags-match-list-sublevels t)))
30 ("h" "Habits" tags-todo "STYLE=\"habit\""
31 ((org-agenda-overriding-header "Habits")
32 (org-agenda-sorting-strategy
33 '(todo-state-down effort-up category-keep))))
37 ((org-agenda-overriding-header "Tasks to Refile")
38 (org-tags-match-list-sublevels nil)))
39 (tags-todo "-CANCELLED/!"
40 ((org-agenda-overriding-header "Stuck Projects")
41 (org-agenda-skip-function 'bh/skip-non-stuck-projects)
42 (org-agenda-sorting-strategy
44 (tags-todo "-HOLD-CANCELLED/!"
45 ((org-agenda-overriding-header "Projects")
46 (org-agenda-skip-function 'bh/skip-non-projects)
47 (org-tags-match-list-sublevels 'indented)
48 (org-agenda-sorting-strategy
50 (tags-todo "-CANCELLED/!NEXT"
51 ((org-agenda-overriding-header (concat "Project Next Tasks"
52 (if bh/hide-scheduled-and-waiting-next-tasks
54 " (including WAITING and SCHEDULED tasks)")))
55 (org-agenda-skip-function 'bh/skip-projects-and-habits-and-single-tasks)
56 (org-tags-match-list-sublevels t)
57 (org-agenda-todo-ignore-scheduled bh/hide-scheduled-and-waiting-next-tasks)
58 (org-agenda-todo-ignore-deadlines bh/hide-scheduled-and-waiting-next-tasks)
59 (org-agenda-todo-ignore-with-date bh/hide-scheduled-and-waiting-next-tasks)
60 (org-agenda-sorting-strategy
61 '(todo-state-down effort-up category-keep))))
62 (tags-todo "-REFILE-CANCELLED-WAITING-HOLD/!"
63 ((org-agenda-overriding-header (concat "Project Subtasks"
64 (if bh/hide-scheduled-and-waiting-next-tasks
66 " (including WAITING and SCHEDULED tasks)")))
67 (org-agenda-skip-function 'bh/skip-non-project-tasks)
68 (org-agenda-todo-ignore-scheduled bh/hide-scheduled-and-waiting-next-tasks)
69 (org-agenda-todo-ignore-deadlines bh/hide-scheduled-and-waiting-next-tasks)
70 (org-agenda-todo-ignore-with-date bh/hide-scheduled-and-waiting-next-tasks)
71 (org-agenda-sorting-strategy
73 (tags-todo "-REFILE-CANCELLED-WAITING-HOLD/!"
74 ((org-agenda-overriding-header (concat "Standalone Tasks"
75 (if bh/hide-scheduled-and-waiting-next-tasks
77 " (including WAITING and SCHEDULED tasks)")))
78 (org-agenda-skip-function 'bh/skip-project-tasks)
79 (org-agenda-todo-ignore-scheduled bh/hide-scheduled-and-waiting-next-tasks)
80 (org-agenda-todo-ignore-deadlines bh/hide-scheduled-and-waiting-next-tasks)
81 (org-agenda-todo-ignore-with-date bh/hide-scheduled-and-waiting-next-tasks)
82 (org-agenda-sorting-strategy
84 (tags-todo "-CANCELLED+WAITING|HOLD/!"
85 ((org-agenda-overriding-header "Waiting and Postponed Tasks")
86 (org-agenda-skip-function 'bh/skip-stuck-projects)
87 (org-tags-match-list-sublevels nil)
88 (org-agenda-todo-ignore-scheduled t)
89 (org-agenda-todo-ignore-deadlines t)))
91 ((org-agenda-overriding-header "Tasks to Archive")
92 (org-agenda-skip-function 'bh/skip-non-archivable-tasks)
93 (org-tags-match-list-sublevels nil))))
96 ; org mode agenda files
97 (setq org-agenda-files
98 (quote ("~/projects/org-notes/debbugs.org"
99 "~/projects/org-notes/notes.org"
100 "~/projects/org-notes/refile.org"
101 "~/projects/org-notes/diary.org"
102 "~/projects/org-notes/ool.org"
103 "~/projects/org-notes/sndservers.org"
104 "~/projects/org-notes/chaim.org"
105 "~/projects/org-notes/wildman.org"
106 "~/projects/org-notes/uddin.org"
107 "~/projects/org-notes/reviews.org"
108 "~/projects/org-notes/hpcbio.org"
109 "~/projects/org-notes/fh.org")))
111 (set-register ?n (cons 'file "~/projects/org-notes/notes.org"))
112 (set-register ?r (cons 'file "~/projects/org-notes/refile.org"))
113 (set-register ?o (cons 'file "~/projects/org-notes/ool.org"))
114 (set-register ?s (cons 'file "~/projects/org-notes/sndservers.org"))
115 (set-register ?c (cons 'file "~/projects/org-notes/chaim.org"))
116 (set-register ?w (cons 'file "~/projects/org-notes/wildman.org"))
117 (set-register ?u (cons 'file "~/projects/org-notes/uddin.org"))
118 (set-register ?R (cons 'file "~/projects/reviews/reviews.org"))
119 (set-register ?d (cons 'file "~/projects/org-notes/diary.org"))
121 (setq org-global-properties '(("Effort_ALL 0 0:10 0:30 1:00 2:00 3:00 4:00 5:00 6:00 7:00")))
122 (setq org-columns-default-format "%40ITEM(Task) %6Effort{:} %CLOCKSUM %PRIORITY %TODO %13SCHEDULED %13DEADLINE %TAGS")
124 (setq org-default-notes-file "~/projects/org-notes/notes.org")
125 (setq org-id-link-to-org-use-id t)
126 (setq org-capture-templates ;; mail-specific note template, identified by "m"
127 '(("m" "Mail" entry (file+headline "~/projects/org-notes/refile.org" "Mail")
128 "* %?\n\n Source: %u, %c\n %i")
129 ("t" "todo" entry (file "~/projects/org-notes/refile.org")
130 "* TODO %?\n :PROPERTIES:\n :END:\n :LOGBOOK:\n :END:\n%U\n%a\n" :clock-in t :clock-resume t)
131 ("r" "respond" entry (file "~/projects/org-notes/refile.org")
132 "* NEXT Respond to %:from on %:subject\nSCHEDULED: %t\n%U\n%a\n" :clock-in t :clock-resume t :immediate-finish t)
133 ("n" "note" entry (file "~/projects/org-notes/refile.org")
134 "* %? :NOTE:\n%U\n%a\n" :clock-in t :clock-resume t)
135 ("s" "schedule" entry (file "~/projects/org-notes/refile.org")
136 "* %? :cal:\n%^{scheduled:}t\n%U\n%a\n" :clock-in t :clock-resume t)
137 ("j" "Journal" entry (file+datetree "~/projects/org-notes/diary.org")
138 "* %?\n%U\n" :clock-in t :clock-resume t)
139 ("w" "org-protocol" entry (file "~/projects/org-notes/refile.org")
140 "* TODO Review %c\n%U\n" :immediate-finish t)
141 ("M" "Meeting" entry (file "~/projects/org-notes/refile.org")
142 "* MEETING with %? :MEETING:\n%U" :clock-in t :clock-resume t)
143 ("S" "Seminar" entry (file "~/projects/org-notes/refile.org")
144 "* SEMINAR notes %? :SEMINAR:\n%U" :clock-in t :clock-resume t)
145 ("P" "Paper to read" entry (file+headline "~/projects/research/papers_to_read.org" "Refile")
146 "* TODO Get/Read %? \n%U" :clock-in t :clock-resume t)
147 ("p" "Phone call" entry (file "~/projects/org-notes/refile.org")
148 "* PHONE %? :PHONE:\n%U" :clock-in t :clock-resume t)
149 ("J" "job" entry (file "~/projects/org-notes/refile.org")
150 "* TODO Apply for %a%? :job:\nSCHEDULED: %(format-time-string \"<%Y-%m-%d 17:00-17:30>\")\n%U\n%a\n" :clock-in t :clock-resume t)
151 ("h" "Habit" entry (file "~/projects/org-notes/refile.org")
152 "* NEXT %?\n%U\n%a\nSCHEDULED: %(format-time-string \"<%Y-%m-%d .+1d/3d>\")\n:PROPERTIES:\n:STYLE: habit\n:REPEAT_TO_STATE: NEXT\n:END:\n%a\n")
156 ;; Remove empty LOGBOOK drawers on clock out
157 (defun bh/remove-empty-drawer-on-clock-out ()
160 (beginning-of-line 0)
161 (org-remove-empty-drawer-at (point))))
163 (defun my/org-add-id ()
166 (if (org-current-level)
174 ; org mode configuration from http://doc.norang.ca/org-mode.html
175 ;; Custom Key Bindings
176 (global-set-key (kbd "<f12>") 'org-agenda)
177 (global-set-key (kbd "<f5>") 'bh/org-todo)
178 (global-set-key (kbd "<S-f5>") 'bh/widen)
179 (global-set-key (kbd "<f7>") 'bh/set-truncate-lines)
180 (global-set-key (kbd "<f8>") 'org-cycle-agenda-files)
181 (global-set-key (kbd "<f9> <f9>") 'bh/show-org-agenda)
182 (global-set-key (kbd "<f9> b") 'bbdb)
183 (global-set-key (kbd "<f9> c") 'calendar)
184 (global-set-key (kbd "<f9> f") 'boxquote-insert-file)
185 (global-set-key (kbd "<f9> h") 'bh/hide-other)
186 (global-set-key (kbd "<f9> n") 'bh/toggle-next-task-display)
187 (global-set-key (kbd "<f9> w") 'widen)
189 ; change the outline mode prefix from C-c @ to C-c C-2
190 (setq outline-minor-mode-prefix "C-c C-2")
191 ;(add-hook 'outline-minor-mode-hook
192 ; (lambda () (local-set-key (kbd "C-c C-2")
193 ; outline-mode-prefix-map)))
195 (global-set-key (kbd "<f9> I") 'bh/punch-in)
196 (global-set-key (kbd "<f9> O") 'bh/punch-out)
198 (global-set-key (kbd "<f9> o") 'bh/make-org-scratch)
200 (global-set-key (kbd "<f9> r") 'boxquote-region)
201 (global-set-key (kbd "<f9> s") 'bh/switch-to-scratch)
203 (global-set-key (kbd "<f9> t") 'bh/insert-inactive-timestamp)
204 (global-set-key (kbd "<f9> T") 'bh/toggle-insert-inactive-timestamp)
206 (global-set-key (kbd "<f9> v") 'visible-mode)
207 (global-set-key (kbd "<f9> l") 'org-toggle-link-display)
208 (global-set-key (kbd "<f9> SPC") 'bh/clock-in-last-task)
209 (global-set-key (kbd "C-<f9>") 'previous-buffer)
210 (global-set-key (kbd "M-<f9>") 'org-toggle-inline-images)
211 (global-set-key (kbd "C-x n r") 'narrow-to-region)
212 (global-set-key (kbd "C-<f10>") 'next-buffer)
213 (global-set-key (kbd "<f11>") 'org-clock-goto)
214 (global-set-key (kbd "C-<f11>") 'org-clock-in)
215 (global-set-key (kbd "C-s-<f12>") 'bh/save-then-publish)
216 (global-set-key (kbd "C-c c") 'org-capture)
218 (defun bh/hide-other ()
221 (org-back-to-heading 'invisible-ok)
227 (defun bh/set-truncate-lines ()
228 "Toggle value of truncate-lines and refresh window display."
230 (setq truncate-lines (not truncate-lines))
231 ;; now refresh window display (an idiom from simple.el):
233 (set-window-start (selected-window)
234 (window-start (selected-window)))))
236 (defun bh/make-org-scratch ()
238 (find-file "/tmp/publish/scratch.org")
239 (gnus-make-directory "/tmp/publish"))
241 (defun bh/switch-to-scratch ()
243 (switch-to-buffer "*scratch*"))
245 (setq org-use-fast-todo-selection t)
246 (setq org-treat-S-cursor-todo-selection-as-state-change nil)
248 (setq org-todo-keywords
249 (quote ((sequence "TODO(t)" "NEXT(n)" "|" "DONE(d)")
250 (sequence "WAITING(w@/!)" "HOLD(h@/!)" "|" "CANCELLED(c@/!)" "PHONE" "MEETING"))))
252 (setq org-todo-keyword-faces
253 (quote (("TODO" :foreground "red" :weight bold)
254 ("NEXT" :foreground "blue" :weight bold)
255 ("DONE" :foreground "forest green" :weight bold)
256 ("WAITING" :foreground "orange" :weight bold)
257 ("HOLD" :foreground "magenta" :weight bold)
258 ("CANCELLED" :foreground "forest green" :weight bold)
259 ("MEETING" :foreground "forest green" :weight bold)
260 ("PHONE" :foreground "forest green" :weight bold))))
262 (setq org-todo-state-tags-triggers
263 (quote (("CANCELLED" ("CANCELLED" . t))
264 ("WAITING" ("WAITING" . t))
265 ("HOLD" ("WAITING") ("HOLD" . t))
266 (done ("WAITING") ("HOLD"))
267 ("TODO" ("WAITING") ("CANCELLED") ("HOLD"))
268 ("NEXT" ("WAITING") ("CANCELLED") ("HOLD"))
269 ("DONE" ("WAITING") ("CANCELLED") ("HOLD")))))
273 ; (add-hook 'org-clock-out-hook 'bh/remove-empty-drawer-on-clock-out 'append)
274 ; add ids on creation of nodes
275 (add-hook 'org-capture-prepare-finalize-hook 'my/org-add-id)
276 ; create function to create headlines in file. This comes from
277 ; http://stackoverflow.com/questions/13340616/assign-ids-to-every-entry-in-org-mode
278 (defun my/org-add-ids-to-headlines-in-file ()
279 "Add ID properties to all headlines in the current file which
280 do not already have one."
282 (org-map-entries 'org-id-get-create))
283 ; if we wanted to do this to every buffer, do the following:
284 ; (add-hook 'org-mode-hook
286 ; (add-hook 'before-save-hook 'my/org-add-ids-to-headlines-in-file nil 'local)))
289 ; resolve clocks after 10 minutes of idle; use xprintidle
290 ; (setq org-clock-idle-time 10)
291 ; (setq org-clock-x11idle-program-name "xprintidle")
293 ; this is from http://doc.norang.ca/org-mode.html#Capture
294 ; use C-M-r for org mode capture
295 (global-set-key (kbd "C-M-r") 'org-capture)
297 ; Targets include this file and any file contributing to the agenda - up to 9 levels deep
298 (setq org-refile-targets (quote ((nil :maxlevel . 9)
299 (org-agenda-files :maxlevel . 9))))
301 ; Use full outline paths for refile targets - we file directly with IDO
302 (setq org-refile-use-outline-path t)
304 ; Targets complete directly with IDO
305 (setq org-outline-path-complete-in-steps nil)
307 ; Allow refile to create parent tasks with confirmation
308 (setq org-refile-allow-creating-parent-nodes (quote confirm))
310 ; ; Use IDO for both buffer and file completion and ido-everywhere to t
311 ; (setq org-completion-use-ido t)
312 ; (setq ido-everywhere t)
313 ; (setq ido-max-directory-size 100000)
314 ; (ido-mode (quote both))
315 ; ; Use the current window when visiting files and buffers with ido
316 ; (setq ido-default-file-method 'selected-window)
317 ; (setq ido-default-buffer-method 'selected-window)
318 ; ; Use the current window for indirect buffer display
319 ; (setq org-indirect-buffer-display 'current-window)
323 ; Exclude DONE state tasks from refile targets
324 (defun bh/verify-refile-target ()
325 "Exclude todo keywords with a done state from refile targets"
326 (not (member (nth 2 (org-heading-components)) org-done-keywords)))
328 (setq org-refile-target-verify-function 'bh/verify-refile-target)
330 ;; ensure that emacsclient will show just the note to be edited when invoked
331 ;; from Mutt, and that it will shut down emacsclient once finished;
332 ;; fallback to legacy behavior when not invoked via org-protocol.
333 (require 'org-protocol)
334 ; (add-hook 'org-capture-mode-hook 'delete-other-windows)
335 (setq my-org-protocol-flag nil)
336 (defadvice org-capture-finalize (after delete-frame-at-end activate)
337 "Delete frame at remember finalization"
338 (progn (if my-org-protocol-flag (delete-frame))
339 (setq my-org-protocol-flag nil)))
340 (defadvice org-capture-refile (around delete-frame-after-refile activate)
341 "Delete frame at remember refile"
342 (if my-org-protocol-flag
344 (setq my-org-protocol-flag nil)
349 (defadvice org-capture-kill (after delete-frame-at-end activate)
350 "Delete frame at remember abort"
351 (progn (if my-org-protocol-flag (delete-frame))
352 (setq my-org-protocol-flag nil)))
353 (defadvice org-protocol-capture (before set-org-protocol-flag activate)
354 (setq my-org-protocol-flag t))
356 (defadvice org-insert-todo-heading (after dla/create-id activate)
361 (add-to-list 'org-modules 'org-habit)
363 ; this comes from http://upsilon.cc/~zack/blog/posts/2010/02/integrating_Mutt_with_Org-mode/
364 (defun open-mail-in-mutt (message)
365 "Open a mail message in Mutt, using an external terminal.
367 Message can be specified either by a path pointing inside a
368 Maildir, or by Message-ID."
369 (interactive "MPath or Message-ID: ")
371 (format "faf xterm -e \"%s %s\""
372 (substitute-in-file-name "$HOME/bin/mutt_open") message)))
374 ;; add support for "mutt:ID" links
375 (org-add-link-type "mutt" 'open-mail-in-mutt)
377 (defun my-org-mode-setup ()
378 (load-library "reftex")
379 (and (buffer-file-name)
380 (file-exists-p (buffer-file-name))
383 (reftex-set-cite-format
384 '((?b . "[[bib:%l][%l-bib]]")
385 (?n . "[[notes:%l][%l-notes]]")
387 (?h . "*** %t\n:PROPERTIES:\n:Custom_ID: %l\n:END:\n[[papers:%l][%l xoj]] [[papers-pdf:%l][pdf]]")))
389 (define-key org-mode-map (kbd "C-c )") 'reftex-citation)
390 (define-key org-mode-map (kbd "C-c [") 'reftex-citation)
391 (define-key org-mode-map (kbd "C-c (") 'org-mode-reftex-search)
392 (define-key org-mode-map (kbd "C-c 0") 'reftex-view-crossref)
394 (add-hook 'org-mode-hook 'my-org-mode-setup)
396 (defun org-mode-reftex-search ()
398 (org-open-link-from-string (format "[[notes:%s]]" (first (reftex-citation t)))))
400 (defun open-research-paper (bibtexkey)
401 "Open a paper by bibtex key"
402 (interactive "bibtex key: ")
405 (substitute-in-file-name "$HOME/bin/bibtex_to_paper") bibtexkey)))
406 (org-add-link-type "papers" 'open-research-paper)
407 (defun open-research-paper-pdf (bibtexkey)
408 "Open a paper pdf by bibtex key"
409 (interactive "bibtex key: ")
411 (format "%s -p evince %s"
412 (substitute-in-file-name "$HOME/bin/bibtex_to_paper") bibtexkey)))
413 (org-add-link-type "papers-pdf" 'open-research-paper-pdf)
415 (add-to-list 'org-link-abbrev-alist
417 "~/projects/research/paper_notes.org::#%s"))
419 ; I pretty much always want hiearchical checkboxes
420 (setq org-hierachical-checkbox-statistics nil)
422 ;; Add \begin{equation}\end{equation} templates to the org mode easy templates
423 (add-to-list 'org-structure-template-alist
424 '("E" "\\begin{equation}\n?\n\\end{equation}"))
427 ;; http://www-public.it-sudparis.eu/~berger_o/weblog/2012/03/23/how-to-manage-and-export-bibliographic-notesrefs-in-org-mode/
428 (defun my-rtcite-export-handler (path desc format)
429 (message "my-rtcite-export-handler is called : path = %s, desc = %s, format = %s" path desc format)
430 (let* ((search (when (string-match "::#?\\(.+\\)\\'" path)
431 (match-string 1 path)))
432 (path (substring path 0 (match-beginning 0))))
433 (cond ((eq format 'latex)
435 (equal 0 (search "rtcite:" desc)))
436 (format "\\cite{%s}" search)
437 (format "\\cite[%s]{%s}" desc search))))))
439 (org-add-link-type "rtcite"
441 'my-rtcite-export-handler)
444 (setq-default org-mobile-directory "/rzlab.ucr.edu:/sites/dav.donarmstrong.com/root/org/")
445 (when (string= system-name "rzlab.ucr.edu")
446 (setq-default org-mobile-directory "/sites/dav.donarmstrong.com/root/org/"))
447 (setq-default org-directory "/home/don/org-mode/")
448 (setq-default org-mobile-inbox-for-pull "/home/don/org-mode/from-mobile.org")
450 ;; org mode ical export
451 (setq org-icalendar-timezone "America/Los_Angeles")
452 (setq org-icalendar-use-scheduled '(todo-start event-if-todo))
453 ;; we already add the id manually
454 ;; (setq org-icalendar-store-UID t)
457 (org-babel-do-load-languages
458 'org-babel-load-languages
465 ;; org-babel-by-backend
466 (defmacro org-babel-by-backend (&rest body)
467 `(case (if (boundp 'backend)
468 (org-export-backend-name backend)
474 ;; ;; stolen from http://kieranhealy.org/esk/kjhealy.html
475 ;; (require 'org-latex)
476 ;; ;; Choose either listings or minted for exporting source code blocks.
477 ;; ;; Using minted (as here) requires pygments be installed. To use the
478 ;; ;; default listings package instead, use
479 ;; ;; (setq org-latex-listings t)
480 ;; ;; and change references to "minted" below to "listings"
481 ;; ; (setq org-latex-listings 'minted)
483 ;; ;; default settings for minted code blocks
484 ;; (setq org-latex-minted-options
485 ;; '(;("frame" "single")
486 ;; ("bgcolor" "bg") ; bg will need to be defined in the preamble of your document. It's defined in org-preamble-pdflatex.sty and org-preamble-xelatex.sty below.
487 ;; ("fontsize" "\\small")
489 ;; ;; turn off the default toc behavior; deal with it properly in headers to files.
490 ;; (defun org-latex-no-toc (depth)
492 ;; (format "%% Org-mode is exporting headings to %s levels.\n"
494 ;; (setq org-latex-format-toc-function 'org-latex-no-toc)
497 (add-to-list 'org-latex-classes
499 "\\documentclass[11pt,oneside,article]{memoir}\n"
500 ("\\section{%s}" . "\\section*{%s}")
501 ("\\subsection{%s}" . "\\subsection*{%s}")
502 ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
503 ("\\paragraph{%s}" . "\\paragraph*{%s}")
504 ("\\subparagraph{%s}" . "\\subparagraph*{%s}")))
506 (setq org-beamer-outline-frame-options "")
508 (add-to-list 'org-latex-classes
510 "\\documentclass[ignorenonframetext]{beamer}
511 [NO-DEFAULT-PACKAGES]
514 ("\\section{%s}" . "\\section*{%s}")
515 ("\\subsection{%s}" . "\\subsection*{%s}")
516 ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
517 ("\\paragraph{%s}" . "\\paragraph*{%s}")
518 ("\\subparagraph{%s}" . "\\subparagraph*{%s}")))
520 (add-to-list 'org-latex-classes
522 "\\documentclass[11pt,oneside]{memoir}\n"
523 ("\\chapter{%s}" . "\\chapter*{%s}")
524 ("\\section{%s}" . "\\section*{%s}")
525 ("\\subsection{%s}" . "\\subsection*{%s}")
526 ("\\subsubsection{%s}" . "\\subsubsection*{%s}")))
528 (add-to-list 'org-latex-classes
530 "\\documentclass[11pt]{letter}
531 [NO-DEFAULT-PACKAGES]
534 ("\\section{%s}" . "\\section*{%s}")
535 ("\\subsection{%s}" . "\\subsection*{%s}")
536 ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
537 ("\\paragraph{%s}" . "\\paragraph*{%s}")
538 ("\\subparagraph{%s}" . "\\subparagraph*{%s}")))
540 ;; Originally taken from Bruno Tavernier: http://thread.gmane.org/gmane.emacs.orgmode/31150/focus=31432
541 ;; but adapted to use latexmk 4.22 or higher.
542 (setq org-latex-pdf-process '("latexmk -pdflatex=xelatex -bibtex -use-make -pdf %f"))
544 ;; Default packages included in /every/ tex file, latex, pdflatex or xelatex
545 (setq org-latex-default-packages-alist
547 (setq org-latex-packages-alist
557 (defun org-create-formula--latex-header ()
558 "Return LaTeX header appropriate for previewing a LaTeX snippet."
559 (let ((info (org-combine-plists (org-export--get-global-options
560 (org-export-get-backend 'latex))
561 (org-export--get-inbuffer-options
562 (org-export-get-backend 'latex)))))
563 (org-latex-guess-babel-language
564 (org-latex-guess-inputenc
565 (org-splice-latex-header
566 org-format-latex-header
567 org-latex-default-packages-alist
569 (plist-get info :latex-header)))
573 ; support ignoring headers in org mode export to latex
574 ; from http://article.gmane.org/gmane.emacs.orgmode/67692
575 (defadvice org-latex-headline (around my-latex-skip-headlines
576 (headline contents info) activate)
577 (if (member "ignoreheading" (org-element-property :tags headline))
578 (setq ad-return-value contents)
581 ;; keep latex logfiles
583 (setq org-latex-remove-logfiles nil)
586 (defun bh/is-project-p ()
587 "Any task with a todo keyword subtask"
591 (subtree-end (save-excursion (org-end-of-subtree t)))
592 (is-a-task (member (nth 2 (org-heading-components)) org-todo-keywords-1)))
595 (while (and (not has-subtask)
596 (< (point) subtree-end)
597 (re-search-forward "^\*+ " subtree-end t))
598 (when (member (org-get-todo-state) org-todo-keywords-1)
599 (setq has-subtask t))))
600 (and is-a-task has-subtask))))
602 (defun bh/is-project-subtree-p ()
603 "Any task with a todo keyword that is in a project subtree.
604 Callers of this function already widen the buffer view."
605 (let ((task (save-excursion (org-back-to-heading 'invisible-ok)
608 (bh/find-project-task)
609 (if (equal (point) task)
613 (defun bh/is-task-p ()
614 "Any task with a todo keyword and no subtask"
618 (subtree-end (save-excursion (org-end-of-subtree t)))
619 (is-a-task (member (nth 2 (org-heading-components)) org-todo-keywords-1)))
622 (while (and (not has-subtask)
623 (< (point) subtree-end)
624 (re-search-forward "^\*+ " subtree-end t))
625 (when (member (org-get-todo-state) org-todo-keywords-1)
626 (setq has-subtask t))))
627 (and is-a-task (not has-subtask)))))
629 (defun bh/is-subproject-p ()
630 "Any task which is a subtask of another project"
631 (let ((is-subproject)
632 (is-a-task (member (nth 2 (org-heading-components)) org-todo-keywords-1)))
634 (while (and (not is-subproject) (org-up-heading-safe))
635 (when (member (nth 2 (org-heading-components)) org-todo-keywords-1)
636 (setq is-subproject t))))
637 (and is-a-task is-subproject)))
639 (defun bh/list-sublevels-for-projects-indented ()
640 "Set org-tags-match-list-sublevels so when restricted to a subtree we list all subtasks.
641 This is normally used by skipping functions where this variable is already local to the agenda."
642 (if (marker-buffer org-agenda-restrict-begin)
643 (setq org-tags-match-list-sublevels 'indented)
644 (setq org-tags-match-list-sublevels nil))
647 (defun bh/list-sublevels-for-projects ()
648 "Set org-tags-match-list-sublevels so when restricted to a subtree we list all subtasks.
649 This is normally used by skipping functions where this variable is already local to the agenda."
650 (if (marker-buffer org-agenda-restrict-begin)
651 (setq org-tags-match-list-sublevels t)
652 (setq org-tags-match-list-sublevels nil))
655 (defvar bh/hide-scheduled-and-waiting-next-tasks t)
657 (defun bh/toggle-next-task-display ()
659 (setq bh/hide-scheduled-and-waiting-next-tasks (not bh/hide-scheduled-and-waiting-next-tasks))
660 (when (equal major-mode 'org-agenda-mode)
662 (message "%s WAITING and SCHEDULED NEXT Tasks" (if bh/hide-scheduled-and-waiting-next-tasks "Hide" "Show")))
664 (defun bh/skip-stuck-projects ()
665 "Skip trees that are not stuck projects"
668 (let ((next-headline (save-excursion (or (outline-next-heading) (point-max)))))
669 (if (bh/is-project-p)
670 (let* ((subtree-end (save-excursion (org-end-of-subtree t)))
674 (while (and (not has-next) (< (point) subtree-end) (re-search-forward "^\\*+ NEXT " subtree-end t))
675 (unless (member "WAITING" (org-get-tags-at))
679 next-headline)) ; a stuck project, has subtasks but no next task
682 (defun bh/skip-non-stuck-projects ()
683 "Skip trees that are not stuck projects"
684 ;; (bh/list-sublevels-for-projects-indented)
687 (let ((next-headline (save-excursion (or (outline-next-heading) (point-max)))))
688 (if (bh/is-project-p)
689 (let* ((subtree-end (save-excursion (org-end-of-subtree t)))
693 (while (and (not has-next) (< (point) subtree-end) (re-search-forward "^\\*+ NEXT " subtree-end t))
694 (unless (member "WAITING" (org-get-tags-at))
698 nil)) ; a stuck project, has subtasks but no next task
701 (defun bh/skip-non-projects ()
702 "Skip trees that are not projects"
703 ;; (bh/list-sublevels-for-projects-indented)
704 (if (save-excursion (bh/skip-non-stuck-projects))
707 (let ((subtree-end (save-excursion (org-end-of-subtree t))))
711 ((and (bh/is-project-subtree-p) (not (bh/is-task-p)))
715 (save-excursion (org-end-of-subtree t))))
717 (defun bh/skip-project-trees-and-habits ()
718 "Skip trees that are projects"
721 (let ((subtree-end (save-excursion (org-end-of-subtree t))))
730 (defun bh/skip-projects-and-habits-and-single-tasks ()
731 "Skip trees that are projects, tasks that are habits, single non-project tasks"
734 (let ((next-headline (save-excursion (or (outline-next-heading) (point-max)))))
738 ((and bh/hide-scheduled-and-waiting-next-tasks
739 (member "WAITING" (org-get-tags-at)))
743 ((and (bh/is-task-p) (not (bh/is-project-subtree-p)))
748 (defun bh/skip-project-tasks-maybe ()
749 "Show tasks related to the current restriction.
750 When restricted to a project, skip project and sub project tasks, habits, NEXT tasks, and loose tasks.
751 When not restricted, skip project and sub-project tasks, habits, and project related tasks."
754 (let* ((subtree-end (save-excursion (org-end-of-subtree t)))
755 (next-headline (save-excursion (or (outline-next-heading) (point-max))))
756 (limit-to-project (marker-buffer org-agenda-restrict-begin)))
762 ((and (not limit-to-project)
763 (bh/is-project-subtree-p))
765 ((and limit-to-project
766 (bh/is-project-subtree-p)
767 (member (org-get-todo-state) (list "NEXT")))
772 (defun bh/skip-project-tasks ()
773 "Show non-project tasks.
774 Skip project and sub-project tasks, habits, and project related tasks."
777 (let* ((subtree-end (save-excursion (org-end-of-subtree t))))
783 ((bh/is-project-subtree-p)
788 (defun bh/skip-non-project-tasks ()
790 Skip project and sub-project tasks, habits, and loose non-project tasks."
793 (let* ((subtree-end (save-excursion (org-end-of-subtree t)))
794 (next-headline (save-excursion (or (outline-next-heading) (point-max)))))
800 ((and (bh/is-project-subtree-p)
801 (member (org-get-todo-state) (list "NEXT")))
803 ((not (bh/is-project-subtree-p))
808 (defun bh/skip-projects-and-habits ()
809 "Skip trees that are projects and tasks that are habits"
812 (let ((subtree-end (save-excursion (org-end-of-subtree t))))
821 (defun bh/skip-non-subprojects ()
822 "Skip trees that are not projects"
823 (let ((next-headline (save-excursion (outline-next-heading))))
824 (if (bh/is-subproject-p)
828 ;; Resume clocking task when emacs is restarted
829 (org-clock-persistence-insinuate)
831 ;; Show lot of clocking history so it's easy to pick items off the C-F11 list
832 (setq org-clock-history-length 23)
833 ;; Resume clocking task on clock-in if the clock is open
834 (setq org-clock-in-resume t)
835 ;; Change tasks to NEXT when clocking in
836 (setq org-clock-in-switch-to-state 'bh/clock-in-to-next)
837 ;; Separate drawers for clocking and logs
838 (setq org-drawers (quote ("PROPERTIES" "LOGBOOK")))
839 ;; Save clock data and state changes and notes in the LOGBOOK drawer
840 (setq org-clock-into-drawer t)
841 (setq org-log-into-drawer t)
842 ;; Sometimes I change tasks I'm clocking quickly - this removes clocked tasks with 0:00 duration
843 (setq org-clock-out-remove-zero-time-clocks t)
844 ;; Clock out when moving task to a done state
845 (setq org-clock-out-when-done t)
846 ;; Save the running clock and all clock history when exiting Emacs, load it on startup
847 (setq org-clock-persist t)
848 ;; Do not prompt to resume an active clock
849 (setq org-clock-persist-query-resume nil)
850 ;; Enable auto clock resolution for finding open clocks
851 (setq org-clock-auto-clock-resolution (quote when-no-clock-is-running))
852 ;; Include current clocking task in clock reports
853 (setq org-clock-report-include-clocking-task t)
856 (defvar bh/keep-clock-running nil)
858 (defun bh/clock-in-to-next (kw)
859 "Switch a task from TODO to NEXT when clocking in.
860 Skips capture tasks, projects, and subprojects.
861 Switch projects and subprojects from NEXT back to TODO"
862 (when (not (and (boundp 'org-capture-mode) org-capture-mode))
864 ((and (member (org-get-todo-state) (list "TODO"))
867 ((and (member (org-get-todo-state) (list "NEXT"))
871 (defun bh/find-project-task ()
872 "Move point to the parent (project) task if any"
875 (let ((parent-task (save-excursion (org-back-to-heading 'invisible-ok) (point))))
876 (while (org-up-heading-safe)
877 (when (member (nth 2 (org-heading-components)) org-todo-keywords-1)
878 (setq parent-task (point))))
879 (goto-char parent-task)
882 (defun bh/punch-in (arg)
883 "Start continuous clocking and set the default task to the
884 selected task. If no task is selected set the Organization task
885 as the default task."
887 (setq bh/keep-clock-running t)
888 (if (equal major-mode 'org-agenda-mode)
890 ;; We're in the agenda
892 (let* ((marker (org-get-at-bol 'org-hd-marker))
893 (tags (org-with-point-at marker (org-get-tags-at))))
894 (if (and (eq arg 4) tags)
895 (org-agenda-clock-in '(16))
896 (bh/clock-in-organization-task-as-default)))
898 ;; We are not in the agenda
902 ; Find the tags on the current task
903 (if (and (equal major-mode 'org-mode) (not (org-before-first-heading-p)) (eq arg 4))
905 (bh/clock-in-organization-task-as-default)))))
907 (defun bh/punch-out ()
909 (setq bh/keep-clock-running nil)
910 (when (org-clock-is-active)
912 (org-agenda-remove-restriction-lock))
914 (defun bh/clock-in-default-task ()
916 (org-with-point-at org-clock-default-task
919 (defun bh/clock-in-parent-task ()
920 "Move point to the parent (project) task if any and clock in"
925 (while (and (not parent-task) (org-up-heading-safe))
926 (when (member (nth 2 (org-heading-components)) org-todo-keywords-1)
927 (setq parent-task (point))))
929 (org-with-point-at parent-task
931 (when bh/keep-clock-running
932 (bh/clock-in-default-task)))))))
934 (defvar bh/organization-task-id "e22cb8bf-07c7-408b-8f60-ff3aadac95e4")
936 (defun bh/clock-in-organization-task-as-default ()
938 (org-with-point-at (org-id-find bh/organization-task-id 'marker)
939 (org-clock-in '(16))))
941 (defun bh/clock-out-maybe ()
942 (when (and bh/keep-clock-running
943 (not org-clock-clocking-in)
944 (marker-buffer org-clock-default-task)
945 (not org-clock-resolving-clocks-due-to-idleness))
946 (bh/clock-in-parent-task)))
948 ; (add-hook 'org-clock-out-hook 'bh/clock-out-maybe 'append)
951 (defun bh/clock-in-task-by-id (id)
952 "Clock in a task by id"
953 (org-with-point-at (org-id-find id 'marker)
956 (defun bh/clock-in-last-task (arg)
957 "Clock in the interrupted task if there is one
958 Skip the default task and get the next one.
959 A prefix arg forces clock in of the default task."
961 (let ((clock-in-to-task
963 ((eq arg 4) org-clock-default-task)
964 ((and (org-clock-is-active)
965 (equal org-clock-default-task (cadr org-clock-history)))
966 (caddr org-clock-history))
967 ((org-clock-is-active) (cadr org-clock-history))
968 ((equal org-clock-default-task (car org-clock-history)) (cadr org-clock-history))
969 (t (car org-clock-history)))))
971 (org-with-point-at clock-in-to-task
972 (org-clock-in nil))))
975 (defun org-export-to-ods ()
977 (let ((csv-file "data.csv"))
978 (org-table-export csv-file "orgtbl-to-csv")
979 (org-odt-convert csv-file "ods" 'open)))
981 ; allow for zero-width-space to be a break in regexp too
982 ; (setcar org-emphasis-regexp-components " [:space:] \t('\"{")
983 ; (setcar (nthcdr 1 org-emphasis-regexp-components) " [:space:]- \t.,:!?;'\")}\\")
984 ; (org-set-emph-re 'org-emphasis-regexp-components org-emphasis-regexp-components)
986 ;; support inserting screen shots
987 (defun my/org-insert-screenshot ()
988 "Take a screenshot into a time stamped unique-named file in the
989 same directory as the org-buffer and insert a link to this file."
991 (defvar my/org-insert-screenshot/filename)
992 (setq my/org-insert-screenshot/filename
994 "Screenshot to insert: "
996 (concat (buffer-file-name) "_" (format-time-string "%Y%m%d_%H%M%S") ".png")
999 (call-process "import" nil nil nil my/org-insert-screenshot/filename)
1000 (insert (concat "[[" my/org-insert-screenshot/filename "]]"))
1001 (org-display-inline-images))
1003 ; from http://orgmode.org/Changes.html
1004 (defun my/org-repair-property-drawers ()
1005 "Fix properties drawers in current buffer.
1006 Ignore non Org buffers."
1008 (when (eq major-mode 'org-mode)
1009 (org-with-wide-buffer
1010 (goto-char (point-min))
1011 (let ((case-fold-search t)
1012 (inline-re (and (featurep 'org-inlinetask)
1013 (concat (org-inlinetask-outline-regexp)
1017 (unless (and inline-re (org-looking-at-p inline-re))
1019 (let ((end (save-excursion (outline-next-heading) (point))))
1021 (when (org-looking-at-p org-planning-line-re) (forward-line))
1022 (when (and (< (point) end)
1023 (not (org-looking-at-p org-property-drawer-re))
1025 (and (re-search-forward org-property-drawer-re end t)
1026 (eq (org-element-type
1027 (save-match-data (org-element-at-point)))
1029 (insert (delete-and-extract-region
1031 (min (1+ (match-end 0)) end)))
1032 (unless (bolp) (insert "\n"))))))))))))
1034 (provide 'org-mode-configuration)