3 PAML (for Phylogentic Analysis by Maximum Likelihood) contains a few
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4 programs for model fitting and phylogenetic tree reconstruction using
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5 nucleotide or amino-acid sequence data. ANSI C source codes as well
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6 as Win32 and MC OSX excutables are distributed. Win32 executables are
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7 in the folder bin. Type, say,
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9 to run the codeml program. For UNIX and OS-X systems, go to the src/
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10 folder to compile the programs: "cd src" and then "make".
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12 The documentation is in doc/pamlDOC.pdf. The program web page is the
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13 following, where the archive can be downloaded:
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15 http://abacus.gene.ucl.ac.uk/software/paml.html
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17 PAML is distributed free of charge for academic use only.
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20 Department of Biology Phone: (+44) (0)20 7679 4379
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21 University College London Fax: (+44) (0)20 7679 7096
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22 Darwin Building Email: z.yang @ ucl.ac.uk
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