README.txt for PAML

PAML (for Phylogentic Analysis by Maximum Likelihood) contains a few
programs for model fitting and phylogenetic tree reconstruction using
nucleotide or amino-acid sequence data.  ANSI C source codes as well
as Win32 and MC OSX excutables are distributed.  Win32 executables are 
in the folder bin.  Type, say, 
	bin\codeml
to run the codeml program.  For UNIX and OS-X systems, go to the src/ 
folder to compile the programs: "cd src" and then "make".

The documentation is in doc/pamlDOC.pdf.  The program web page is the 
following, where the archive can be downloaded:

	http://abacus.gene.ucl.ac.uk/software/paml.html

PAML is distributed free of charge for academic use only.

Ziheng Yang
Department of Biology                   Phone: (+44) (0)20 7679 4379
University College London               Fax:   (+44) (0)20 7679 7096
Darwin Building                         Email: z.yang @ ucl.ac.uk
Gower Street
London WC1E 6BT
England