1 # Don's Cluster Scripts
3 This repo contains three tools which you might find useful; but
4 really, you probably just want it for `dqsub`.
6 ## dqsub -- qsub or sbatch generator
8 Use this script to generate qsub scripts. You can run it like:
10 `dqsub -q default --mem 40G --ppn 12 make foo`
14 `ls -1 */|dqsub -q budget --mem 5 --ppn 6 --array chdir make`
16 See its documentation for more details.
20 Quick script to get FPKMs from an SRR. Don't actually use this
25 Run make with some wrapper options; mainly useful so you can do
27 `qsub -v MAKE_OPTS=foo -l ppn:5,mem:40G run_make`
29 but this is largely superseded by `dqsub`.