uiuc_igb_scripts.git
2017-07-13 Don Armstrongadd readme for uiuc_igb_scripts master
2017-06-27 Don Armstrongthe shell must be specified last
2017-06-27 Don Armstrongslurm interactive jobs need --pty, a shell, and srun
2017-06-26 Don Armstrongsilence "which sbatch" checking
2017-06-06 Don Armstrongfix sbatch array options
2017-06-06 Don Armstrongoutput correct job submitter in interactive debug
2017-06-06 Don Armstrongsupport precommands before running scripts
2017-02-08 Don Armstrongslurm writes output to the same file by default
2017-02-08 Don Armstrongslurm options are braindead and require =
2017-02-08 Don Armstrongno need to use = for long options
2017-02-08 Don Armstrongfix $? test for batch option
2017-02-08 Don Armstrongfix slurm typo
2017-02-08 Don Armstrongsbatch reads from STDIN by default
2017-02-08 Don Armstrongsupport slurm
2016-07-08 Don Armstrongonly escape if the command contains a space
2016-07-08 Don Armstrongtweak -N sanitation
2016-07-08 Don Armstrongsanitize -N
2016-06-27 Don Armstrongadd --join option
2016-06-27 Don Armstrongsupport account option -A
2015-08-06 Don Armstrongadd support for more -l options to qsub
2015-08-05 Don Armstrongautomatically specify a job name (no more STDIN)
2015-08-05 Don Armstrongallow for running all array items in one job
2015-08-05 Don Armstronghandle running multiple array options in each job to...
2015-08-05 Don Armstrongfixup array slot limit
2015-08-05 Don Armstrongadd array slot limit
2015-08-05 Don Armstrongadd missing _ in here doc end
2015-08-05 Don Armstrongremove die because we now support array options
2015-08-05 Don Armstrongadd support for array options
2015-08-05 Don Armstrongmem needs to be concatenated, not separated with ,
2015-08-05 Don Armstrongspecify the -I option correctly
2015-08-05 Don Armstrongactually return the qsub options
2015-08-05 Don Armstrongavoid using Pod::Simple because biocluster doesn't...
2015-08-05 Don Armstrongmake dqsub executable
2015-08-05 Don Armstrongfix two typos in dqsub
2015-08-05 Don Armstrongadd start of dqsub
2015-07-27 Don Armstrongtweak the invocation slightly
2015-07-27 Don Armstrongadd the option to give a -j to make
2015-05-27 Don Armstrongfix if statement
2015-05-27 Don Armstrongadd make
2015-05-26 Don Armstrongonly e-mail on abort
2015-05-26 Don Armstrongwe can only request 18GB
2015-05-26 Don Armstrongadd destination directory
2015-05-26 Don Armstrongstop immediately upon error
2015-05-26 Don Armstrongreserve 32GB of ram
2015-05-26 Don Armstrongsend mail when the job ends
2015-05-26 Don Armstronguse - for stdin
2015-05-26 Don Armstrongwe want samtools 1.0, not samtools 0.1.8
2015-05-26 Don Armstrongcompress fastq
2015-05-26 Don Armstrongload samtools
2015-05-26 Don Armstronguse rsync instead of wget
2015-05-26 Don Armstrongfix wrong SRR variable name
2015-05-26 Don Armstrongquote variables
2015-05-26 Don Armstrongadd missing space
2015-05-26 Don Armstrongfix variable names which were wrong
2015-05-26 Don Armstrongadd fpkm script