add readme for uiuc_igb_scripts

diff --git a/README.md b/README.md
new file mode 100644 (file)
index 0000000..874ede1
--- /dev/null
+++ b/README.md
@@ -0,0 +1,29 @@
+# Don's Cluster Scripts
+
+This repo contains three tools which you might find useful; but
+really, you probably just want it for `dqsub`.
+
+## dqsub -- qsub or sbatch generator
+
+Use this script to generate qsub scripts. You can run it like:
+
+`dqsub -q default --mem 40G --ppn 12 make foo`
+
+or
+
+`ls -1 */|dqsub -q budget --mem 5 --ppn 6 --array chdir make`
+
+See its documentation for more details.
+
+## fpkm_from_srr
+
+Quick script to get FPKMs from an SRR. Don't actually use this
+anymore.
+
+## run_make
+
+Run make with some wrapper options; mainly useful so you can do
+
+`qsub -v MAKE_OPTS=foo -l ppn:5,mem:40G run_make`
+
+but this is largely superseded by `dqsub`.