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1127 A7876A28152A018B00A0AE86 /* subsample.h */,
1128 A7876A25152A017C00A0AE86 /* subsample.cpp */,
1129 A7C3DC0E14FE469500FE1924 /* trialswap2.h */,
1130 A7C3DC0D14FE469500FE1924 /* trialSwap2.cpp */,
1131 A7FF19F0140FFDA500AD216D /* trimoligos.h */,
1132 A7FF19F1140FFDA500AD216D /* trimoligos.cpp */,
1133 A7E9B87412D37EC400DA6239 /* validcalculator.cpp */,
1134 A7E9B87512D37EC400DA6239 /* validcalculator.h */,
1135 A7E9B87612D37EC400DA6239 /* validparameter.cpp */,
1136 A7E9B87712D37EC400DA6239 /* validparameter.h */,
1137 A7E9B87812D37EC400DA6239 /* venn.cpp */,
1138 A7E9B87912D37EC400DA6239 /* venn.h */,
1139 A7E9B87E12D37EC400DA6239 /* weightedlinkage.cpp */,
1142 sourceTree = "<group>";
1144 1AB674ADFE9D54B511CA2CBB /* Products */ = {
1147 8DD76FB20486AB0100D96B5E /* Mothur */,
1150 sourceTree = "<group>";
1152 A7D161E7149F7F50000523E8 /* fortran */ = {
1155 A7FA2B5A14A0F0C2007C09A6 /* intrv.f */,
1156 A7FA2B1514A0EBEA007C09A6 /* sslvrg.f */,
1157 A7FA2ABC14A0E881007C09A6 /* bsplvb.f */,
1158 A7FA2ABD14A0E881007C09A6 /* bsplvd.f */,
1159 A7FA2ABE14A0E881007C09A6 /* bvalue.f */,
1160 A7FA2ABF14A0E881007C09A6 /* daxpy.f */,
1161 A7FA2AC014A0E881007C09A6 /* ddot.f */,
1162 A7FA2AC114A0E881007C09A6 /* dpbfa.f */,
1163 A7FA2AC214A0E881007C09A6 /* dpbsl.f */,
1164 A7FA2AC314A0E881007C09A6 /* interv.f */,
1165 A7FA2AC414A0E881007C09A6 /* sgram.f */,
1166 A7FA2AC514A0E881007C09A6 /* sinerp.f */,
1167 A7FA2AC614A0E881007C09A6 /* stxwx.f */,
1170 sourceTree = "<group>";
1172 A7E9BA3812D3956100DA6239 /* commands */ = {
1175 A7E9B6AE12D37EC400DA6239 /* command.hpp */,
1176 A7E9B65212D37EC300DA6239 /* aligncommand.h */,
1177 A7E9B65112D37EC300DA6239 /* aligncommand.cpp */,
1178 A7A61F2B130062E000E05B6B /* amovacommand.h */,
1179 A7A61F2C130062E000E05B6B /* amovacommand.cpp */,
1180 A71CB15F130B04A2001E7287 /* anosimcommand.h */,
1181 A71CB15E130B04A2001E7287 /* anosimcommand.cpp */,
1182 A7E9B66112D37EC300DA6239 /* binsequencecommand.h */,
1183 A7E9B66012D37EC300DA6239 /* binsequencecommand.cpp */,
1184 A7E9B67312D37EC400DA6239 /* catchallcommand.h */,
1185 A7E9B67212D37EC400DA6239 /* catchallcommand.cpp */,
1186 A7E9B67B12D37EC400DA6239 /* chimerabellerophoncommand.h */,
1187 A7E9B67A12D37EC400DA6239 /* chimerabellerophoncommand.cpp */,
1188 A7E9B67D12D37EC400DA6239 /* chimeraccodecommand.h */,
1189 A7E9B67C12D37EC400DA6239 /* chimeraccodecommand.cpp */,
1190 A7E9B67F12D37EC400DA6239 /* chimeracheckcommand.h */,
1191 A7E9B67E12D37EC400DA6239 /* chimeracheckcommand.cpp */,
1192 A7E9B68312D37EC400DA6239 /* chimerapintailcommand.h */,
1193 A7E9B68212D37EC400DA6239 /* chimerapintailcommand.cpp */,
1194 A7BF2230145879B2000AD524 /* chimeraperseuscommand.h */,
1195 A7BF2231145879B2000AD524 /* chimeraperseuscommand.cpp */,
1196 A7E9B68B12D37EC400DA6239 /* chimeraslayercommand.h */,
1197 A7E9B68A12D37EC400DA6239 /* chimeraslayercommand.cpp */,
1198 A74D36B6137DAFAA00332B0C /* chimerauchimecommand.h */,
1199 A74D36B7137DAFAA00332B0C /* chimerauchimecommand.cpp */,
1200 A7E9B68D12D37EC400DA6239 /* chopseqscommand.h */,
1201 A7E9B68C12D37EC400DA6239 /* chopseqscommand.cpp */,
1202 A7E9B69112D37EC400DA6239 /* classifyotucommand.h */,
1203 A7E9B69012D37EC400DA6239 /* classifyotucommand.cpp */,
1204 A7E9B69312D37EC400DA6239 /* classifyseqscommand.h */,
1205 A7E9B69212D37EC400DA6239 /* classifyseqscommand.cpp */,
1206 A7EEB0F714F29C1B00344B83 /* classifytreecommand.h */,
1207 A7EEB0F414F29BFD00344B83 /* classifytreecommand.cpp */,
1208 A7E9B69712D37EC400DA6239 /* clearcutcommand.h */,
1209 A7E9B69612D37EC400DA6239 /* clearcutcommand.cpp */,
1210 A73DDBB813C4A0D1006AAE38 /* clearmemorycommand.h */,
1211 A73DDBB913C4A0D1006AAE38 /* clearmemorycommand.cpp */,
1212 A7E9B69D12D37EC400DA6239 /* clustercommand.h */,
1213 A7E9B69C12D37EC400DA6239 /* clustercommand.cpp */,
1214 A7E9B69F12D37EC400DA6239 /* clusterdoturcommand.h */,
1215 A7E9B69E12D37EC400DA6239 /* clusterdoturcommand.cpp */,
1216 A7E9B6A112D37EC400DA6239 /* clusterfragmentscommand.h */,
1217 A7E9B6A012D37EC400DA6239 /* clusterfragmentscommand.cpp */,
1218 A7E9B6A312D37EC400DA6239 /* clustersplitcommand.h */,
1219 A7E9B6A212D37EC400DA6239 /* clustersplitcommand.cpp */,
1220 A7E9B6A912D37EC400DA6239 /* collectcommand.h */,
1221 A7E9B6A812D37EC400DA6239 /* collectcommand.cpp */,
1222 A7E9B6AD12D37EC400DA6239 /* collectsharedcommand.h */,
1223 A7E9B6AC12D37EC400DA6239 /* collectsharedcommand.cpp */,
1224 A7E9B6B812D37EC400DA6239 /* consensusseqscommand.h */,
1225 A7E9B6B712D37EC400DA6239 /* consensusseqscommand.cpp */,
1226 A7C3DC0A14FE457500FE1924 /* cooccurrencecommand.h */,
1227 A7C3DC0914FE457500FE1924 /* cooccurrencecommand.cpp */,
1228 A7E9B6BA12D37EC400DA6239 /* corraxescommand.h */,
1229 A7E9B6B912D37EC400DA6239 /* corraxescommand.cpp */,
1230 A795840B13F13CD900F201D5 /* countgroupscommand.h */,
1231 A795840C13F13CD900F201D5 /* countgroupscommand.cpp */,
1232 A7730EFD13967241007433A3 /* countseqscommand.h */,
1233 A7730EFE13967241007433A3 /* countseqscommand.cpp */,
1234 A77EBD2C1523707F00ED407C /* createdatabasecommand.h */,
1235 A77EBD2E1523709100ED407C /* createdatabasecommand.cpp */,
1236 A7E9B6C412D37EC400DA6239 /* deconvolutecommand.h */,
1237 A7E9B6C312D37EC400DA6239 /* deconvolutecommand.cpp */,
1238 A7E9B6C612D37EC400DA6239 /* degapseqscommand.h */,
1239 A7E9B6C512D37EC400DA6239 /* degapseqscommand.cpp */,
1240 A7E9B6C812D37EC400DA6239 /* deuniqueseqscommand.h */,
1241 A7E9B6C712D37EC400DA6239 /* deuniqueseqscommand.cpp */,
1242 A77A221D139001B600B0BE70 /* deuniquetreecommand.h */,
1243 A77A221E139001B600B0BE70 /* deuniquetreecommand.cpp */,
1244 A7E9B6CC12D37EC400DA6239 /* distancecommand.h */,
1245 A7E9B6CB12D37EC400DA6239 /* distancecommand.cpp */,
1246 A7E9B6E412D37EC400DA6239 /* filterseqscommand.h */,
1247 A7E9B6E312D37EC400DA6239 /* filterseqscommand.cpp */,
1248 A778FE69134CA6CA00C0BA33 /* getcommandinfocommand.h */,
1249 A778FE6A134CA6CA00C0BA33 /* getcommandinfocommand.cpp */,
1250 A7FE7C3E1330EA1000F7B327 /* getcurrentcommand.h */,
1251 A7FE7C3F1330EA1000F7B327 /* getcurrentcommand.cpp */,
1252 A7E9B6F312D37EC400DA6239 /* getgroupcommand.h */,
1253 A7E9B6F212D37EC400DA6239 /* getgroupcommand.cpp */,
1254 A7E9B6F512D37EC400DA6239 /* getgroupscommand.h */,
1255 A7E9B6F412D37EC400DA6239 /* getgroupscommand.cpp */,
1256 A7E9B6F712D37EC400DA6239 /* getlabelcommand.h */,
1257 A7E9B6F612D37EC400DA6239 /* getlabelcommand.cpp */,
1258 A7E9B6F912D37EC400DA6239 /* getlineagecommand.h */,
1259 A7E9B6F812D37EC400DA6239 /* getlineagecommand.cpp */,
1260 A7E9B6FB12D37EC400DA6239 /* getlistcountcommand.h */,
1261 A7E9B6FA12D37EC400DA6239 /* getlistcountcommand.cpp */,
1262 A7E9B6FF12D37EC400DA6239 /* getoturepcommand.h */,
1263 A7E9B6FE12D37EC400DA6239 /* getoturepcommand.cpp */,
1264 A7E9B70112D37EC400DA6239 /* getotuscommand.h */,
1265 A7E9B70012D37EC400DA6239 /* getotuscommand.cpp */,
1266 A7E9B70312D37EC400DA6239 /* getrabundcommand.h */,
1267 A7E9B70212D37EC400DA6239 /* getrabundcommand.cpp */,
1268 A7E9B70512D37EC400DA6239 /* getrelabundcommand.h */,
1269 A7E9B70412D37EC400DA6239 /* getrelabundcommand.cpp */,
1270 A7E9B70712D37EC400DA6239 /* getsabundcommand.h */,
1271 A7E9B70612D37EC400DA6239 /* getsabundcommand.cpp */,
1272 A7E9B70912D37EC400DA6239 /* getseqscommand.h */,
1273 A7E9B70812D37EC400DA6239 /* getseqscommand.cpp */,
1274 A7E9B70B12D37EC400DA6239 /* getsharedotucommand.h */,
1275 A7E9B70A12D37EC400DA6239 /* getsharedotucommand.cpp */,
1276 A7E9B71B12D37EC400DA6239 /* hclustercommand.h */,
1277 A7E9B71A12D37EC400DA6239 /* hclustercommand.cpp */,
1278 A7E9B71F12D37EC400DA6239 /* heatmapcommand.h */,
1279 A7E9B71E12D37EC400DA6239 /* heatmapcommand.cpp */,
1280 A7E9B72312D37EC400DA6239 /* heatmapsimcommand.h */,
1281 A7E9B72212D37EC400DA6239 /* heatmapsimcommand.cpp */,
1282 A7E9B72912D37EC400DA6239 /* helpcommand.h */,
1283 A7E9B72812D37EC400DA6239 /* helpcommand.cpp */,
1284 A75790571301749D00A30DAB /* homovacommand.h */,
1285 A75790581301749D00A30DAB /* homovacommand.cpp */,
1286 A7E9B72C12D37EC400DA6239 /* indicatorcommand.h */,
1287 A7E9B72B12D37EC400DA6239 /* indicatorcommand.cpp */,
1288 A7E9B73C12D37EC400DA6239 /* libshuffcommand.h */,
1289 A7E9B73B12D37EC400DA6239 /* libshuffcommand.cpp */,
1290 A7E9B73E12D37EC400DA6239 /* listseqscommand.h */,
1291 A7E9B73D12D37EC400DA6239 /* listseqscommand.cpp */,
1292 A7FA10001302E096003860FE /* mantelcommand.h */,
1293 A7FA10011302E096003860FE /* mantelcommand.cpp */,
1294 A724D2B4153C8600000A826F /* makebiomcommand.h */,
1295 A724D2B6153C8628000A826F /* makebiomcommand.cpp */,
1296 A799F5B71309A3E000AEEFA0 /* makefastqcommand.h */,
1297 A799F5B81309A3E000AEEFA0 /* makefastqcommand.cpp */,
1298 A7E9B74412D37EC400DA6239 /* makegroupcommand.h */,
1299 A7E9B74312D37EC400DA6239 /* makegroupcommand.cpp */,
1300 A7E9B74A12D37EC400DA6239 /* matrixoutputcommand.h */,
1301 A7E9B74912D37EC400DA6239 /* matrixoutputcommand.cpp */,
1302 A7E9B75412D37EC400DA6239 /* mergefilecommand.h */,
1303 A7E9B75312D37EC400DA6239 /* mergefilecommand.cpp */,
1304 A71FE12A12EDF72400963CA7 /* mergegroupscommand.h */,
1305 A71FE12B12EDF72400963CA7 /* mergegroupscommand.cpp */,
1306 A7E9B75812D37EC400DA6239 /* metastatscommand.h */,
1307 A7E9B75712D37EC400DA6239 /* metastatscommand.cpp */,
1308 A7E9B75A12D37EC400DA6239 /* mgclustercommand.h */,
1309 A7E9B75912D37EC400DA6239 /* mgclustercommand.cpp */,
1310 A7E9B76A12D37EC400DA6239 /* nocommands.h */,
1311 A7E9B76912D37EC400DA6239 /* nocommands.cpp */,
1312 A7E9B76C12D37EC400DA6239 /* normalizesharedcommand.h */,
1313 A7E9B76B12D37EC400DA6239 /* normalizesharedcommand.cpp */,
1314 A713EBEB12DC7C5E000092AC /* nmdscommand.h */,
1315 A713EBEC12DC7C5E000092AC /* nmdscommand.cpp */,
1316 A7A3C8C814D041AD00B1BFBE /* otuassociationcommand.h */,
1317 A7A3C8C714D041AD00B1BFBE /* otuassociationcommand.cpp */,
1318 A7E9B77A12D37EC400DA6239 /* otuhierarchycommand.h */,
1319 A7E9B77912D37EC400DA6239 /* otuhierarchycommand.cpp */,
1320 A7E9B77E12D37EC400DA6239 /* pairwiseseqscommand.h */,
1321 A7E9B77D12D37EC400DA6239 /* pairwiseseqscommand.cpp */,
1322 A7E9B78012D37EC400DA6239 /* parsefastaqcommand.h */,
1323 A7E9B77F12D37EC400DA6239 /* parsefastaqcommand.cpp */,
1324 A7E9B78212D37EC400DA6239 /* parselistscommand.h */,
1325 A7E9B78112D37EC400DA6239 /* parselistscommand.cpp */,
1326 A7E9B78612D37EC400DA6239 /* parsimonycommand.h */,
1327 A7E9B78512D37EC400DA6239 /* parsimonycommand.cpp */,
1328 A7FC486512D795D60055BC5C /* pcacommand.h */,
1329 A7FC486612D795D60055BC5C /* pcacommand.cpp */,
1330 A7E9B78812D37EC400DA6239 /* pcoacommand.h */,
1331 A7E9B78712D37EC400DA6239 /* pcoacommand.cpp */,
1332 A76CDD7F1510F09A004C8458 /* pcrseqscommand.h */,
1333 A76CDD811510F143004C8458 /* prcseqscommand.cpp */,
1334 A7E9B78C12D37EC400DA6239 /* phylodiversitycommand.h */,
1335 A7E9B78B12D37EC400DA6239 /* phylodiversitycommand.cpp */,
1336 A7E9B79212D37EC400DA6239 /* phylotypecommand.h */,
1337 A7E9B79112D37EC400DA6239 /* phylotypecommand.cpp */,
1338 A7E9B79612D37EC400DA6239 /* pipelinepdscommand.h */,
1339 A7E9B79512D37EC400DA6239 /* pipelinepdscommand.cpp */,
1340 A7E9B79812D37EC400DA6239 /* preclustercommand.h */,
1341 A7E9B79712D37EC400DA6239 /* preclustercommand.cpp */,
1342 A7E9B7A212D37EC400DA6239 /* quitcommand.h */,
1343 A7E9B7A112D37EC400DA6239 /* quitcommand.cpp */,
1344 A7E9B7AC12D37EC400DA6239 /* rarefactcommand.h */,
1345 A7E9B7AB12D37EC400DA6239 /* rarefactcommand.cpp */,
1346 A7E9B7AF12D37EC400DA6239 /* rarefactsharedcommand.h */,
1347 A7E9B7AE12D37EC400DA6239 /* rarefactsharedcommand.cpp */,
1348 A7E9B7B712D37EC400DA6239 /* readdistcommand.h */,
1349 A7E9B7B612D37EC400DA6239 /* readdistcommand.cpp */,
1350 A7E9B7BC12D37EC400DA6239 /* readotucommand.h */,
1351 A7E9B7BB12D37EC400DA6239 /* readotucommand.cpp */,
1352 A7E9B7C212D37EC400DA6239 /* readtreecommand.h */,
1353 A7E9B7C112D37EC400DA6239 /* readtreecommand.cpp */,
1354 A7E9B7C412D37EC400DA6239 /* removegroupscommand.h */,
1355 A7E9B7C312D37EC400DA6239 /* removegroupscommand.cpp */,
1356 A7E9B7C612D37EC400DA6239 /* removelineagecommand.h */,
1357 A7E9B7C512D37EC400DA6239 /* removelineagecommand.cpp */,
1358 A7E9B7C812D37EC400DA6239 /* removeotuscommand.h */,
1359 A7E9B7C712D37EC400DA6239 /* removeotuscommand.cpp */,
1360 A727864212E9E28C00F86ABA /* removerarecommand.h */,
1361 A727864312E9E28C00F86ABA /* removerarecommand.cpp */,
1362 A7E9B7CA12D37EC400DA6239 /* removeseqscommand.h */,
1363 A7E9B7C912D37EC400DA6239 /* removeseqscommand.cpp */,
1364 A7E9B7CE12D37EC400DA6239 /* reversecommand.h */,
1365 A7E9B7CD12D37EC400DA6239 /* reversecommand.cpp */,
1366 A7E9B7D212D37EC400DA6239 /* screenseqscommand.h */,
1367 A7E9B7D112D37EC400DA6239 /* screenseqscommand.cpp */,
1368 A7E9B7D412D37EC400DA6239 /* secondarystructurecommand.h */,
1369 A7E9B7D312D37EC400DA6239 /* secondarystructurecommand.cpp */,
1370 A7E9B7D612D37EC400DA6239 /* sensspeccommand.h */,
1371 A7E9B7D512D37EC400DA6239 /* sensspeccommand.cpp */,
1372 A7E9B7D812D37EC400DA6239 /* seqerrorcommand.h */,
1373 A7E9B7D712D37EC400DA6239 /* seqerrorcommand.cpp */,
1374 A7E9B7DA12D37EC400DA6239 /* seqsummarycommand.h */,
1375 A7E9B7D912D37EC400DA6239 /* seqsummarycommand.cpp */,
1376 A7FE7E6B13311EA400F7B327 /* setcurrentcommand.h */,
1377 A7FE7E6C13311EA400F7B327 /* setcurrentcommand.cpp */,
1378 A7E9B7E012D37EC400DA6239 /* setdircommand.h */,
1379 A7E9B7DF12D37EC400DA6239 /* setdircommand.cpp */,
1380 A7E9B7E212D37EC400DA6239 /* setlogfilecommand.h */,
1381 A7E9B7E112D37EC400DA6239 /* setlogfilecommand.cpp */,
1382 A7E9B7E412D37EC400DA6239 /* sffinfocommand.h */,
1383 A7E9B7E312D37EC400DA6239 /* sffinfocommand.cpp */,
1384 A7E9B7F312D37EC400DA6239 /* sharedcommand.h */,
1385 A7E9B7F212D37EC400DA6239 /* sharedcommand.cpp */,
1386 A7E9B82812D37EC400DA6239 /* shhhercommand.h */,
1387 A7E9B82712D37EC400DA6239 /* shhhercommand.cpp */,
1388 A774101214695AF60098E6AC /* shhhseqscommand.h */,
1389 A774101314695AF60098E6AC /* shhhseqscommand.cpp */,
1390 A7A32DAC14DC43D10001D2E5 /* sortseqscommand.h */,
1391 A7A32DA914DC43B00001D2E5 /* sortseqscommand.cpp */,
1392 A7E9B84012D37EC400DA6239 /* splitabundcommand.h */,
1393 A7E9B83F12D37EC400DA6239 /* splitabundcommand.cpp */,
1394 A7E9B84212D37EC400DA6239 /* splitgroupscommand.h */,
1395 A7E9B84112D37EC400DA6239 /* splitgroupscommand.cpp */,
1396 A7E9B85012D37EC400DA6239 /* subsamplecommand.h */,
1397 A7E9B84F12D37EC400DA6239 /* subsamplecommand.cpp */,
1398 A7E9B85812D37EC400DA6239 /* summarycommand.h */,
1399 A7E9B85712D37EC400DA6239 /* summarycommand.cpp */,
1400 A754149514840CF7005850D1 /* summaryqualcommand.h */,
1401 A754149614840CF7005850D1 /* summaryqualcommand.cpp */,
1402 A7E9B85A12D37EC400DA6239 /* summarysharedcommand.h */,
1403 A7E9B85912D37EC400DA6239 /* summarysharedcommand.cpp */,
1404 A7FFB556142CA02C004884F2 /* summarytaxcommand.h */,
1405 A7FFB557142CA02C004884F2 /* summarytaxcommand.cpp */,
1406 A7E9B85C12D37EC400DA6239 /* systemcommand.h */,
1407 A7E9B85B12D37EC400DA6239 /* systemcommand.cpp */,
1408 A7E9B86312D37EC400DA6239 /* treegroupscommand.h */,
1409 A7E9B86212D37EC400DA6239 /* treegroupscommand.cpp */,
1410 A7E9B86912D37EC400DA6239 /* trimflowscommand.h */,
1411 A7E9B86812D37EC400DA6239 /* trimflowscommand.cpp */,
1412 A7E9B86B12D37EC400DA6239 /* trimseqscommand.h */,
1413 A7E9B86A12D37EC400DA6239 /* trimseqscommand.cpp */,
1414 A7E9B86D12D37EC400DA6239 /* unifracunweightedcommand.h */,
1415 A7E9B86C12D37EC400DA6239 /* unifracunweightedcommand.cpp */,
1416 A7E9B86F12D37EC400DA6239 /* unifracweightedcommand.h */,
1417 A7E9B86E12D37EC400DA6239 /* unifracweightedcommand.cpp */,
1418 A7E9B87B12D37EC400DA6239 /* venncommand.h */,
1419 A7E9B87A12D37EC400DA6239 /* venncommand.cpp */,
1422 sourceTree = "<group>";
1424 A7E9BA3F12D395F700DA6239 /* calculators */ = {
1427 7E78911B135F3E8600E725D2 /* eachgapdistignorens.h */,
1428 A7E9B64F12D37EC300DA6239 /* ace.cpp */,
1429 A7E9B65012D37EC300DA6239 /* ace.h */,
1430 A7E9B65E12D37EC300DA6239 /* bergerparker.cpp */,
1431 A7E9B65F12D37EC300DA6239 /* bergerparker.h */,
1432 A7E9B66612D37EC400DA6239 /* boneh.cpp */,
1433 A7E9B66712D37EC400DA6239 /* boneh.h */,
1434 A7E9B66812D37EC400DA6239 /* bootstrap.cpp */,
1435 A7E9B66912D37EC400DA6239 /* bootstrap.h */,
1436 A7E9B66C12D37EC400DA6239 /* bstick.cpp */,
1437 A7E9B66D12D37EC400DA6239 /* bstick.h */,
1438 A7E9B66E12D37EC400DA6239 /* calculator.cpp */,
1439 A7E9B66F12D37EC400DA6239 /* calculator.h */,
1440 A7E9B67012D37EC400DA6239 /* canberra.cpp */,
1441 A7E9B67112D37EC400DA6239 /* canberra.h */,
1442 A7E9B67612D37EC400DA6239 /* chao1.cpp */,
1443 A7E9B67712D37EC400DA6239 /* chao1.h */,
1444 A7E9B6A412D37EC400DA6239 /* cmdargs.cpp */,
1445 A7E9B6A512D37EC400DA6239 /* cmdargs.h */,
1446 A7E9B6BB12D37EC400DA6239 /* coverage.cpp */,
1447 A7E9B6BC12D37EC400DA6239 /* coverage.h */,
1448 A7E9B6CA12D37EC400DA6239 /* dist.h */,
1449 A7E9B6C012D37EC400DA6239 /* dayhoff.h */,
1450 A7E9B6D512D37EC400DA6239 /* eachgapdist.h */,
1451 A7E9B6D612D37EC400DA6239 /* eachgapignore.h */,
1452 A7E9B6D712D37EC400DA6239 /* efron.cpp */,
1453 A7E9B6D812D37EC400DA6239 /* efron.h */,
1454 A7E9B6E212D37EC400DA6239 /* filters.h */,
1455 A7E9B6F012D37EC400DA6239 /* geom.cpp */,
1456 A7E9B6F112D37EC400DA6239 /* geom.h */,
1457 A7E9B70E12D37EC400DA6239 /* goodscoverage.cpp */,
1458 A7E9B70F12D37EC400DA6239 /* goodscoverage.h */,
1459 A7E9B71212D37EC400DA6239 /* gower.cpp */,
1460 A7E9B71312D37EC400DA6239 /* gower.h */,
1461 A7E9B71612D37EC400DA6239 /* hamming.cpp */,
1462 A7E9B71712D37EC400DA6239 /* hamming.h */,
1463 A7E9B72412D37EC400DA6239 /* heip.cpp */,
1464 A7E9B72512D37EC400DA6239 /* heip.h */,
1465 A7E9B72612D37EC400DA6239 /* hellinger.cpp */,
1466 A7E9B72712D37EC400DA6239 /* hellinger.h */,
1467 A7E9B72A12D37EC400DA6239 /* ignoregaps.h */,
1468 A7E9B72F12D37EC400DA6239 /* invsimpson.cpp */,
1469 A7E9B73012D37EC400DA6239 /* invsimpson.h */,
1470 A7E9B73112D37EC400DA6239 /* jackknife.cpp */,
1471 A7E9B73212D37EC400DA6239 /* jackknife.h */,
1472 A7E9B74112D37EC400DA6239 /* logsd.cpp */,
1473 A7E9B74212D37EC400DA6239 /* logsd.h */,
1474 A7E9B74712D37EC400DA6239 /* manhattan.cpp */,
1475 A7E9B74812D37EC400DA6239 /* manhattan.h */,
1476 A7E9B74B12D37EC400DA6239 /* memchi2.cpp */,
1477 A7E9B74C12D37EC400DA6239 /* memchi2.h */,
1478 A7E9B74D12D37EC400DA6239 /* memchord.cpp */,
1479 A7E9B74E12D37EC400DA6239 /* memchord.h */,
1480 A7E9B74F12D37EC400DA6239 /* memeuclidean.cpp */,
1481 A7E9B75012D37EC400DA6239 /* memeuclidean.h */,
1482 A7E9B75112D37EC400DA6239 /* mempearson.cpp */,
1483 A7E9B75212D37EC400DA6239 /* mempearson.h */,
1484 A7E9B76D12D37EC400DA6239 /* npshannon.cpp */,
1485 A7E9B76E12D37EC400DA6239 /* npshannon.h */,
1486 A7E9B76F12D37EC400DA6239 /* nseqs.h */,
1487 A7E9B77112D37EC400DA6239 /* odum.cpp */,
1488 A7E9B77212D37EC400DA6239 /* odum.h */,
1489 A7E9B77312D37EC400DA6239 /* onegapdist.h */,
1490 A7E9B77412D37EC400DA6239 /* onegapignore.h */,
1491 A7E9B78412D37EC400DA6239 /* parsimony.h */,
1492 A7E9B78312D37EC400DA6239 /* parsimony.cpp */,
1493 A7E9B79912D37EC400DA6239 /* prng.cpp */,
1494 A7E9B79A12D37EC400DA6239 /* prng.h */,
1495 A7E9B79D12D37EC400DA6239 /* qstat.cpp */,
1496 A7E9B79E12D37EC400DA6239 /* qstat.h */,
1497 A7E9B7E512D37EC400DA6239 /* shannon.cpp */,
1498 A7E9B7E612D37EC400DA6239 /* shannon.h */,
1499 A7E9B7E712D37EC400DA6239 /* shannoneven.cpp */,
1500 A7E9B7E812D37EC400DA6239 /* shannoneven.h */,
1501 A7E9B7E912D37EC400DA6239 /* sharedace.cpp */,
1502 A7E9B7EA12D37EC400DA6239 /* sharedace.h */,
1503 A7E9B7EC12D37EC400DA6239 /* sharedanderbergs.cpp */,
1504 A7E9B7ED12D37EC400DA6239 /* sharedanderbergs.h */,
1505 A7E9B7EE12D37EC400DA6239 /* sharedbraycurtis.cpp */,
1506 A7E9B7EF12D37EC400DA6239 /* sharedbraycurtis.h */,
1507 A7E9B7F012D37EC400DA6239 /* sharedchao1.cpp */,
1508 A7E9B7F112D37EC400DA6239 /* sharedchao1.h */,
1509 A7E9B7F412D37EC400DA6239 /* sharedjabund.cpp */,
1510 A7E9B7F512D37EC400DA6239 /* sharedjabund.h */,
1511 A7E9B7F612D37EC400DA6239 /* sharedjackknife.cpp */,
1512 A7E9B7F712D37EC400DA6239 /* sharedjackknife.h */,
1513 A7E9B7F812D37EC400DA6239 /* sharedjclass.cpp */,
1514 A7E9B7F912D37EC400DA6239 /* sharedjclass.h */,
1515 A7E9B7FA12D37EC400DA6239 /* sharedjest.cpp */,
1516 A7E9B7FB12D37EC400DA6239 /* sharedjest.h */,
1517 A7E9B7FC12D37EC400DA6239 /* sharedkstest.cpp */,
1518 A7E9B7FD12D37EC400DA6239 /* sharedkstest.h */,
1519 A7E9B7FE12D37EC400DA6239 /* sharedkulczynski.cpp */,
1520 A7E9B7FF12D37EC400DA6239 /* sharedkulczynski.h */,
1521 A7E9B80012D37EC400DA6239 /* sharedkulczynskicody.cpp */,
1522 A7E9B80112D37EC400DA6239 /* sharedkulczynskicody.h */,
1523 A7E9B80212D37EC400DA6239 /* sharedlennon.cpp */,
1524 A7E9B80312D37EC400DA6239 /* sharedlennon.h */,
1525 A7E9B80612D37EC400DA6239 /* sharedmarczewski.cpp */,
1526 A7E9B80712D37EC400DA6239 /* sharedmarczewski.h */,
1527 A7E9B80812D37EC400DA6239 /* sharedmorisitahorn.cpp */,
1528 A7E9B80912D37EC400DA6239 /* sharedmorisitahorn.h */,
1529 A7E9B80A12D37EC400DA6239 /* sharednseqs.h */,
1530 A7E9B80B12D37EC400DA6239 /* sharedochiai.cpp */,
1531 A7E9B80C12D37EC400DA6239 /* sharedochiai.h */,
1532 A7E9B81512D37EC400DA6239 /* sharedsobs.cpp */,
1533 A7E9B81612D37EC400DA6239 /* sharedsobs.h */,
1534 A7E9B81712D37EC400DA6239 /* sharedsobscollectsummary.cpp */,
1535 A7E9B81812D37EC400DA6239 /* sharedsobscollectsummary.h */,
1536 A7E9B81912D37EC400DA6239 /* sharedsorabund.cpp */,
1537 A7E9B81A12D37EC400DA6239 /* sharedsorabund.h */,
1538 A7E9B81B12D37EC400DA6239 /* sharedsorclass.cpp */,
1539 A7E9B81C12D37EC400DA6239 /* sharedsorclass.h */,
1540 A7E9B81D12D37EC400DA6239 /* sharedsorest.cpp */,
1541 A7E9B81E12D37EC400DA6239 /* sharedsorest.h */,
1542 A7E9B81F12D37EC400DA6239 /* sharedthetan.cpp */,
1543 A7E9B82012D37EC400DA6239 /* sharedthetan.h */,
1544 A7E9B82112D37EC400DA6239 /* sharedthetayc.cpp */,
1545 A7E9B82212D37EC400DA6239 /* sharedthetayc.h */,
1546 A7E9B82512D37EC400DA6239 /* shen.cpp */,
1547 A7E9B82612D37EC400DA6239 /* shen.h */,
1548 A7E9B82912D37EC400DA6239 /* simpson.cpp */,
1549 A7E9B82A12D37EC400DA6239 /* simpson.h */,
1550 A7E9B82B12D37EC400DA6239 /* simpsoneven.cpp */,
1551 A7E9B82C12D37EC400DA6239 /* simpsoneven.h */,
1552 A7E9B83212D37EC400DA6239 /* smithwilson.cpp */,
1553 A7E9B83312D37EC400DA6239 /* smithwilson.h */,
1554 A7E9B83412D37EC400DA6239 /* sobs.h */,
1555 A7E9B83512D37EC400DA6239 /* soergel.cpp */,
1556 A7E9B83612D37EC400DA6239 /* soergel.h */,
1557 A7E9B83712D37EC400DA6239 /* solow.cpp */,
1558 A7E9B83812D37EC400DA6239 /* solow.h */,
1559 A7E9B83B12D37EC400DA6239 /* spearman.cpp */,
1560 A7E9B83C12D37EC400DA6239 /* spearman.h */,
1561 A7E9B83D12D37EC400DA6239 /* speciesprofile.cpp */,
1562 A7E9B83E12D37EC400DA6239 /* speciesprofile.h */,
1563 A7E9B84512D37EC400DA6239 /* structchi2.cpp */,
1564 A7E9B84612D37EC400DA6239 /* structchi2.h */,
1565 A7E9B84712D37EC400DA6239 /* structchord.cpp */,
1566 A7E9B84812D37EC400DA6239 /* structchord.h */,
1567 A7E9B84912D37EC400DA6239 /* structeuclidean.cpp */,
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1569 A7E9B84B12D37EC400DA6239 /* structkulczynski.cpp */,
1570 A7E9B84C12D37EC400DA6239 /* structkulczynski.h */,
1571 A7E9B84D12D37EC400DA6239 /* structpearson.cpp */,
1572 A7E9B84E12D37EC400DA6239 /* structpearson.h */,
1573 A7E9B86112D37EC400DA6239 /* treecalculator.h */,
1574 A7E9B87112D37EC400DA6239 /* unweighted.h */,
1575 A7E9B87012D37EC400DA6239 /* unweighted.cpp */,
1576 A7E9B87212D37EC400DA6239 /* uvest.cpp */,
1577 A7E9B87312D37EC400DA6239 /* uvest.h */,
1578 A7E9B87D12D37EC400DA6239 /* weighted.h */,
1579 A7E9B87C12D37EC400DA6239 /* weighted.cpp */,
1580 A7E9B87F12D37EC400DA6239 /* whittaker.cpp */,
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1595 A7E9B66212D37EC300DA6239 /* blastalign.cpp */,
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1597 A7E9B66412D37EC400DA6239 /* blastdb.cpp */,
1598 A7E9B66512D37EC400DA6239 /* blastdb.hpp */,
1599 A7E9B6BD12D37EC400DA6239 /* database.cpp */,
1600 A7E9B6BE12D37EC400DA6239 /* database.hpp */,
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1602 A7E9B6CD12D37EC400DA6239 /* distancedb.cpp */,
1603 A7E9B6CE12D37EC400DA6239 /* distancedb.hpp */,
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1605 A7E9B6DF12D37EC400DA6239 /* fastamap.h */,
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1607 A7E9B6E712D37EC400DA6239 /* flowdata.cpp */,
1608 A7E9B6EE12D37EC400DA6239 /* fullmatrix.cpp */,
1609 A7E9B6EF12D37EC400DA6239 /* fullmatrix.h */,
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1611 A7E9B71512D37EC400DA6239 /* groupmap.h */,
1612 A7E9B73312D37EC400DA6239 /* kmer.cpp */,
1613 A7E9B73412D37EC400DA6239 /* kmer.hpp */,
1614 A7E9B73512D37EC400DA6239 /* kmerdb.cpp */,
1615 A7E9B73612D37EC400DA6239 /* kmerdb.hpp */,
1616 A7E9B73F12D37EC400DA6239 /* listvector.cpp */,
1617 A7E9B74012D37EC400DA6239 /* listvector.hpp */,
1618 A7E9B75F12D37EC400DA6239 /* nameassignment.cpp */,
1619 A7E9B76012D37EC400DA6239 /* nameassignment.hpp */,
1620 A7E9B77712D37EC400DA6239 /* ordervector.cpp */,
1621 A7E9B77812D37EC400DA6239 /* ordervector.hpp */,
1622 A7E9B79F12D37EC400DA6239 /* qualityscores.cpp */,
1623 A7E9B7A012D37EC400DA6239 /* qualityscores.h */,
1624 A7E9B7A312D37EC400DA6239 /* rabundvector.cpp */,
1625 A7E9B7A412D37EC400DA6239 /* rabundvector.hpp */,
1626 A721765513BB9F7D0014DAAE /* referencedb.h */,
1627 A721765613BB9F7D0014DAAE /* referencedb.cpp */,
1628 A7E9B7CB12D37EC400DA6239 /* reportfile.cpp */,
1629 A7E9B7CC12D37EC400DA6239 /* reportfile.h */,
1630 A7E9B7CF12D37EC400DA6239 /* sabundvector.cpp */,
1631 A7E9B7D012D37EC400DA6239 /* sabundvector.hpp */,
1632 A7E9B7DB12D37EC400DA6239 /* sequence.cpp */,
1633 A7E9B7DC12D37EC400DA6239 /* sequence.hpp */,
1634 A7E9B7DD12D37EC400DA6239 /* sequencedb.cpp */,
1635 A7E9B7DE12D37EC400DA6239 /* sequencedb.h */,
1636 A7F9F5CD141A5E500032F693 /* sequenceparser.h */,
1637 A7F9F5CE141A5E500032F693 /* sequenceparser.cpp */,
1638 A7E9B80412D37EC400DA6239 /* sharedlistvector.cpp */,
1639 A7E9B80512D37EC400DA6239 /* sharedlistvector.h */,
1640 A7E9B80E12D37EC400DA6239 /* sharedordervector.h */,
1641 A7E9B80D12D37EC400DA6239 /* sharedordervector.cpp */,
1642 A7E9B81012D37EC400DA6239 /* sharedrabundfloatvector.h */,
1643 A7E9B80F12D37EC400DA6239 /* sharedrabundfloatvector.cpp */,
1644 A7E9B81112D37EC400DA6239 /* sharedrabundvector.cpp */,
1645 A7E9B81212D37EC400DA6239 /* sharedrabundvector.h */,
1646 A7E9B81312D37EC400DA6239 /* sharedsabundvector.cpp */,
1647 A7E9B81412D37EC400DA6239 /* sharedsabundvector.h */,
1648 A7E9B83912D37EC400DA6239 /* sparsematrix.cpp */,
1649 A7E9B83A12D37EC400DA6239 /* sparsematrix.hpp */,
1650 A7E9B85112D37EC400DA6239 /* suffixdb.cpp */,
1651 A7E9B85212D37EC400DA6239 /* suffixdb.hpp */,
1652 A7E9B85312D37EC400DA6239 /* suffixnodes.cpp */,
1653 A7E9B85412D37EC400DA6239 /* suffixnodes.hpp */,
1654 A7E9B85512D37EC400DA6239 /* suffixtree.cpp */,
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1656 A7E9B85F12D37EC400DA6239 /* tree.cpp */,
1657 A7E9B86012D37EC400DA6239 /* tree.h */,
1658 A7E9B86412D37EC400DA6239 /* treemap.cpp */,
1659 A7E9B86512D37EC400DA6239 /* treemap.h */,
1660 A7E9B86612D37EC400DA6239 /* treenode.cpp */,
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1672 A7E9B67512D37EC400DA6239 /* ccode.h */,
1673 A7E9B67812D37EC400DA6239 /* chimera.cpp */,
1674 A7E9B67912D37EC400DA6239 /* chimera.h */,
1675 A7E9B68012D37EC400DA6239 /* chimeracheckrdp.cpp */,
1676 A7E9B68112D37EC400DA6239 /* chimeracheckrdp.h */,
1677 A7E9B68412D37EC400DA6239 /* chimerarealigner.cpp */,
1678 A7E9B68512D37EC400DA6239 /* chimerarealigner.h */,
1679 A7E9B6C212D37EC400DA6239 /* decalc.h */,
1680 A7E9B6C112D37EC400DA6239 /* decalc.cpp */,
1681 A7E9B68812D37EC400DA6239 /* chimeraslayer.cpp */,
1682 A7E9B68912D37EC400DA6239 /* chimeraslayer.h */,
1683 A7E9B74612D37EC400DA6239 /* maligner.h */,
1684 A7E9B74512D37EC400DA6239 /* maligner.cpp */,
1685 A7BF221314587886000AD524 /* myPerseus.h */,
1686 A7BF221214587886000AD524 /* myPerseus.cpp */,
1687 A7E9B79312D37EC400DA6239 /* pintail.cpp */,
1688 A7E9B79412D37EC400DA6239 /* pintail.h */,
1689 A7E9B82E12D37EC400DA6239 /* slayer.cpp */,
1690 A7E9B82F12D37EC400DA6239 /* slayer.h */,
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1701 A7E9B68F12D37EC400DA6239 /* classify.h */,
1702 A7E9B73812D37EC400DA6239 /* knn.h */,
1703 A7E9B73712D37EC400DA6239 /* knn.cpp */,
1704 A7E9B78D12D37EC400DA6239 /* phylosummary.cpp */,
1705 A7E9B78E12D37EC400DA6239 /* phylosummary.h */,
1706 A7E9B78F12D37EC400DA6239 /* phylotree.cpp */,
1707 A7E9B79012D37EC400DA6239 /* phylotree.h */,
1708 A7E9B85D12D37EC400DA6239 /* taxonomyequalizer.cpp */,
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1718 A7E9B69512D37EC400DA6239 /* clearcut.h */,
1719 A7E9B6B312D37EC400DA6239 /* common.h */,
1720 A7E9B6CF12D37EC400DA6239 /* distclearcut.cpp */,
1721 A7E9B6D012D37EC400DA6239 /* distclearcut.h */,
1722 A7E9B6D312D37EC400DA6239 /* dmat.cpp */,
1723 A7E9B6D412D37EC400DA6239 /* dmat.h */,
1724 A7E9B6DC12D37EC400DA6239 /* fasta.cpp */,
1725 A7E9B6DD12D37EC400DA6239 /* fasta.h */,
1726 A7E9B6FD12D37EC400DA6239 /* getopt_long.h */,
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1739 A7E9B6ED12D37EC400DA6239 /* formatphylip.h */,
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1741 A7E9B7B112D37EC400DA6239 /* readblast.h */,
1742 A7E9B7B212D37EC400DA6239 /* readcluster.cpp */,
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1745 A7E9B7B512D37EC400DA6239 /* readcolumn.h */,
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1767 A73DDC3613C4BF64006AAE38 /* mothurmetastats.h */,
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1769 A74A9A9D148E881E00AB5E3E /* spline.h */,
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