"xtableFtable", "print.xtableFtable",
"toLatex.xtable",
"autoformat", "xalign", "xdigits", "xdisplay",
- "sanitize", "sanitize.numbers", "sanitize.final", "as.is", "as.math")
+ "sanitize", "sanitize.numbers", "sanitize.final", "as.is", "as.math",
+ "format.ftable")
S3method("print", "xtable")
S3method("print", "xtableMatharray")
S3method("display<-", "xtable")
S3method("display", "xtable")
+S3method("format", "ftable")
+
S3method("xtable", "data.frame")
S3method("xtable", "matrix")
S3method("xtable", "table")
S3method("xtable", "stsls")
S3method("xtable", "summary.stsls")
S3method("xtable", "sarlm.pred")
-S3method("xtable", "lagImpact")
+###S3method("xtable", "lagImpact")
S3method("xtable", "splm")
S3method("xtable", "summary.splm")
S3method("xtable", "sphet")
--- /dev/null
+### copy of function stats:::format.ftable because unexported from stats\r
+format.ftable <- function (x, quote = TRUE, digits = getOption("digits"),\r
+ method = c("non.compact", "row.compact",\r
+ "col.compact", "compact"),\r
+ lsep = " | ", ...)\r
+{\r
+ if (!inherits(x, "ftable"))\r
+ stop("'x' must be an \"ftable\" object")\r
+ charQuote <- function(s) {\r
+ if (quote && length(s)){\r
+ paste0("\"", s, "\"")\r
+ } else {\r
+ s\r
+ }\r
+ }\r
+ makeLabels <- function(lst) {\r
+ lens <- lengths(lst)\r
+ cplensU <- c(1, cumprod(lens))\r
+ cplensD <- rev(c(1, cumprod(rev(lens))))\r
+ y <- NULL\r
+ for (i in rev(seq_along(lst))) {\r
+ ind <- 1 + seq.int(from = 0, to = lens[i] - 1) *\r
+ cplensD[i + 1L]\r
+ tmp <- character(length = cplensD[i])\r
+ tmp[ind] <- charQuote(lst[[i]])\r
+ y <- cbind(rep(tmp, times = cplensU[i]), y)\r
+ }\r
+ y\r
+ }\r
+ makeNames <- function(x) {\r
+ nmx <- names(x)\r
+ if (is.null(nmx)) {\r
+ rep_len("", length(x))\r
+ } else {\r
+ nmx\r
+ }\r
+ }\r
+ l.xrv <- length(xrv <- attr(x, "row.vars"))\r
+ l.xcv <- length(xcv <- attr(x, "col.vars"))\r
+ method <- match.arg(method)\r
+ if (l.xrv == 0) {\r
+ if (method == "col.compact"){\r
+ method <- "non.compact"\r
+ } else if (method == "compact") {\r
+ method <- "row.compact"\r
+ }\r
+ }\r
+ if (l.xcv == 0) {\r
+ if (method == "row.compact") {\r
+ method <- "non.compact"\r
+ } else if (method == "compact") {\r
+ method <- "col.compact"\r
+ }\r
+ }\r
+ LABS <- switch(method,\r
+ non.compact =\r
+ {cbind(rbind(matrix("",\r
+ nrow = length(xcv),\r
+ ncol = length(xrv)),\r
+ charQuote(makeNames(xrv)),\r
+ makeLabels(xrv)),\r
+ c(charQuote(makeNames(xcv)),\r
+ rep("", times = nrow(x) + 1)))},\r
+ row.compact =\r
+ {cbind(rbind(matrix("",\r
+ nrow = length(xcv) - 1,\r
+ ncol = length(xrv)),\r
+ charQuote(makeNames(xrv)),\r
+ makeLabels(xrv)),\r
+ c(charQuote(makeNames(xcv)),\r
+ rep("", times = nrow(x))))},\r
+ col.compact =\r
+ {cbind(rbind(cbind(matrix("",\r
+ nrow = length(xcv),\r
+ ncol = length(xrv) - 1),\r
+ charQuote(makeNames(xcv))),\r
+ charQuote(makeNames(xrv)),\r
+ makeLabels(xrv)))},\r
+ compact =\r
+ {xrv.nms <- makeNames(xrv)\r
+ xcv.nms <- makeNames(xcv)\r
+ mat <-\r
+ cbind(rbind(cbind(matrix("",\r
+ nrow = l.xcv - 1,\r
+ ncol = l.xrv - 1),\r
+ charQuote(makeNames(xcv[-l.xcv]))),\r
+ charQuote(xrv.nms), makeLabels(xrv)))\r
+ mat[l.xcv, l.xrv] <- paste(tail(xrv.nms, 1),\r
+ tail(xcv.nms, 1),\r
+ sep = lsep)\r
+ mat},\r
+ stop("wrong method"))\r
+ DATA <- rbind(if (length(xcv)) t(makeLabels(xcv)),\r
+ if (method %in% c("non.compact", "col.compact"))\r
+ { rep("", times = ncol(x)) },\r
+ format(unclass(x), digits = digits, ...) )\r
+ cbind(apply(LABS, 2L, format, justify = "left"),\r
+ apply(DATA, 2L, format, justify = "right"))\r
+}\r
display = display, auto = auto, ...))
}
+
+### This method removed because of the need to copy code to pass CRAN checks
+### lagImpactMat is neither exported nor documented in spdep
+
### lagImpact objects
-xtable.lagImpact <- function(x, caption = NULL, label = NULL, align = NULL,
- digits = NULL, display = NULL,
- auto = FALSE, ...) {
- xtable(spdep:::lagImpactMat(x), caption = caption, label = label,
- align = align, digits = digits,
- display = display, auto = auto, ...)
-}
+## xtable.lagImpact <- function(x, caption = NULL, label = NULL, align = NULL,
+## digits = NULL, display = NULL,
+## auto = FALSE, ...) {
+## xtable(spdep:::lagImpactMat(x), caption = caption, label = label,
+## align = align, digits = digits,
+## display = display, auto = auto, ...)
+## }
### package splm
### splm objects
nCharCols <- attr(x, "nChars")[2]
nRowVars <- length(attr(x, "row.vars"))
nColVars <- length(attr(x, "col.vars"))
- fmtFtbl <- stats:::format.ftable(x, quote = quote, digits = digits,
- method = method, lsep = lsep)
+ fmtFtbl <- format.ftable(x, quote = quote, digits = digits,
+ method = method, lsep = lsep)
attr(fmtFtbl, "caption") <- caption
attr(fmtFtbl, "label") <- label
## if method is "compact", rotate both if either requested
--- /dev/null
+%% File src/library/stats/man/read.ftable.Rd\r
+%% Part of the R package, https://www.R-project.org\r
+%% Copyright 1995-2014 R Core Team\r
+%% Copyright 2002-2013 The R Foundation\r
+%% Distributed under GPL 2 or later\r
+\r
+%% Copied to document copy of unexported function format.ftable\r
+\r
+\name{format.ftable}\r
+\title{Format Flat Contingency Tables}\r
+\alias{format.ftable}\r
+\description{\r
+ Format \sQuote{flat} contingency tables.\r
+}\r
+\usage{\r
+\method{format}{ftable}(x, quote = TRUE, digits = getOption("digits"),\r
+ method = c("non.compact", "row.compact",\r
+ "col.compact", "compact"),\r
+ lsep = " | ", \dots)\r
+}\r
+\arguments{\r
+ \item{x}{an object of class \code{"ftable"}.}\r
+ \item{quote}{a character string giving the set of quoting characters\r
+ for \code{read.ftable}; to disable quoting altogether, use\r
+ \code{quote=""}. For \code{write.table}, a logical indicating\r
+ whether strings in the data will be surrounded by double quotes.}\r
+ \item{digits}{an integer giving the number of significant digits to\r
+ use for (the cell entries of) \code{x}.}\r
+ \item{method}{string specifying how the \code{"ftable"} object is formatted\r
+ (and printed if used as in \code{write.ftable()} or the \code{print}\r
+ method). Can be abbreviated. Available methods are (see the examples):\r
+ \describe{\r
+ \item{"non.compact"}{the default representation of an\r
+ \code{"ftable"} object.}\r
+ \item{"row.compact"}{a row-compact version without empty cells\r
+ below the column labels.}\r
+ \item{"col.compact"}{a column-compact version without empty cells\r
+ to the right of the row labels.}\r
+ \item{"compact"}{a row- and column-compact version. This may imply\r
+ a row and a column label sharing the same cell. They are then\r
+ separated by the string \code{lsep}.}\r
+ }\r
+ }\r
+ \item{lsep}{only for \code{method = "compact"}, the separation string\r
+ for row and column labels.}\r
+ \item{\dots}{further arguments such as \code{method}, passed to\r
+ \code{format()}.}\r
+}\r
+\details{\r
+ This format method is a copy of \code{format.ftable} from\r
+ \pkg{stats}, and this man page is derived from the page\r
+ \code{\link[stats]{read.ftable}}.\r
+}\r
+\seealso{\r
+ \code{\link[stats]{ftable}} and\r
+ \code{\link[stats]{read.ftable}} for more information on flat\r
+ contingency tables.\r
+}\r
+\examples{\r
+ft22 <- ftable(Titanic, row.vars = 2:1, col.vars = 4:3)\r
+write.ftable(ft22, quote = FALSE)\r
+write.ftable(ft22, quote = FALSE, method="row.compact")\r
+write.ftable(ft22, quote = FALSE, method="col.compact")\r
+write.ftable(ft22, quote = FALSE, method="compact")\r
+}\r
+\keyword{category}\r
\alias{xtable.stsls}
\alias{xtable.summary.stsls}
\alias{xtable.sarlm.pred}
-\alias{xtable.lagImpact}
+%%%\alias{xtable.lagImpact}
\alias{xtable.splm}
\alias{xtable.summary.splm}
\alias{xtable.sphet}
xtable(p1)\r
@ %def\r
\r
-This method transforms the \code{sarlm.pred} objects into data frames, allowing any number of attributes vectors which may vary according to predictor types.\r
+This method transforms the \code{sarlm.pred} objects into data frames,\r
+allowing any number of attributes vectors which may vary according to\r
+predictor types.\r
\r
<<xtablesarlmpred2, results = 'asis'>>=\r
xtable(p2)\r
@ %def\r
\r
-\subsubsection{\code{lagImpact} objects}\r
-\label{sec:codelagimpact-objects}\r
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\r
+%% xtable.lagImpactMat removed because of problems with unexported function\r
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\r
\r
-The \code{xtable} method returns the values of direct, indirect and total impacts for all the variables in the model. The class \code{lagImpact} have two different sets of attributes according to if simulations are used. But the \code{xtable} method always returns the three components of the non-simulation case.\r
+%% \subsubsection{\code{lagImpact} objects}\r
+%% \label{sec:codelagimpact-objects}\r
\r
-<<xtablelagimpactexact, results = 'asis'>>=\r
-xtable(imp.exact)\r
-@ %def\r
+%% The \code{xtable} method returns the values of direct, indirect and\r
+%% total impacts for all the variables in the model. The class\r
+%% \code{lagImpact} have two different sets of attributes according to if\r
+%% simulations are used. But the \code{xtable} method always returns the\r
+%% three components of the non-simulation case.\r
\r
-\p\r
-<<xtablelagimpactmcmc, results = 'asis'>>=\r
-xtable(imp.sim)\r
-@ %def\r
+%% <<xtablelagimpactexact, results = 'asis'>>=\r
+%% xtable(imp.exact)\r
+%% @ %def\r
+\r
+%% \p\r
+%% <<xtablelagimpactmcmc, results = 'asis'>>=\r
+%% xtable(imp.sim)\r
+%% @ %def\r
\r
\r
\subsubsection{\code{spautolm} objects}\r
xtable(GM)\r
@ %def\r
\r
-The \code{xtable} method works the same on impacts of \code{splm} models.\r
\r
-<<xtablesplmimpacts, results = 'asis'>>=\r
-xtable(imp.spml)\r
-@ %def\r
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\r
+%% xtable.lagImpactMat removed because of problems with unexported function\r
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\r
+\r
+%% The \code{xtable} method works the same on impacts of \code{splm} models.\r
+\r
+%% <<xtablesplmimpacts, results = 'asis'>>=\r
+%% xtable(imp.spml)\r
+%% @ %def\r
\r
\subsection{The package \pkg{sphet}}\r
\label{sec:package-pkgsphet}\r
xtable(res.gstsls)\r
@ %def\r
\r
-\code{sphet} also provides a method for computing impacts.\r
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\r
+%% xtable.lagImpactMat removed because of problems with unexported function\r
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%\r
+%% \code{sphet} also provides a method for computing impacts.\r
\r
-<<xtablesphetimpacts, results = 'asis'>>=\r
-xtable(imp.gstsls)\r
-@ %def\r
+%% <<xtablesphetimpacts, results = 'asis'>>=\r
+%% xtable(imp.gstsls)\r
+%% @ %def\r
\r
\section{The \pkg{zoo} package}\r
\label{sec:pkgzoo-package}\r
\r
- \r
+\r
<<zoo, results = 'asis'>>=\r
library(zoo)\r
xDate <- as.Date("2003-02-01") + c(1, 3, 7, 9, 14) - 1\r
as.ts(xDate)\r
x <- zoo(rnorm(5), xDate)\r
xtable(x)\r
-@ %def \r
+@ %def\r
\r
\r
\p\r
tempTable\r
tempZoo <- as.zoo(tempTs)\r
xtable(tempZoo, digits = 0)\r
-@ %def \r
+@ %def\r
\r
\r
\section{The \pkg{survival} package}\r
\label{sec:pkgsurvival-package}\r
\r
- \r
+\r
<<survival, results = 'asis'>>=\r
library(survival)\r
-test1 <- list(time=c(4,3,1,1,2,2,3), \r
- status=c(1,1,1,0,1,1,0), \r
- x=c(0,2,1,1,1,0,0), \r
- sex=c(0,0,0,0,1,1,1)) \r
-coxFit <- coxph(Surv(time, status) ~ x + strata(sex), test1) \r
+test1 <- list(time=c(4,3,1,1,2,2,3),\r
+ status=c(1,1,1,0,1,1,0),\r
+ x=c(0,2,1,1,1,0,0),\r
+ sex=c(0,0,0,0,1,1,1))\r
+coxFit <- coxph(Surv(time, status) ~ x + strata(sex), test1)\r
xtable(coxFit)\r
-@ %def \r
+@ %def\r
\r
\end{document}\r
projects / xtable.git / commitdiff