fix bam/sam and fastq/fastq.gz mixup in presentation

diff --git a/using_make_for_science.Rnw b/using_make_for_science.Rnw
index 12ce5e7f07bf7c07053283d722fc0a1e2b9733b5..4513c1101655e344357f5326fd3cb35eb6388caf 100644 (file)
--- a/using_make_for_science.Rnw
+++ b/using_make_for_science.Rnw
@@ -214,7 +214,7 @@ TARGETS: PREREQUISITES
 
 \begin{frame}[fragile]{Some Functions}
   \begin{itemize}
 
 \begin{frame}[fragile]{Some Functions}
   \begin{itemize}

-  \item \mintinline{make}{$(patsubst %.bam,%.sam,foo.sam bar.sam)} %$
+  \item \mintinline{make}{$(patsubst %.sam,%.bam,foo.sam bar.sam)} %$

       -- returns foo.bam bar.bam.
   \item \mintinline{make}{$(filter-out %.bam,foo.sam bar.bam)} %$
       -- returns foo.sam
       -- returns foo.bam bar.bam.
   \item \mintinline{make}{$(filter-out %.bam,foo.sam bar.bam)} %$
       -- returns foo.sam


@@ -271,7 +271,7 @@ clean:
 
 \begin{frame}[fragile]{Special Targets}
 \begin{minted}[showtabs]{make}
 
 \begin{frame}[fragile]{Special Targets}
 \begin{minted}[showtabs]{make}

-%.fasta.gz: %.fasta
+%.fasta: %.fasta.gz

        gzip -dc $< > $@
 
 %.bam: %.sam
        gzip -dc $< > $@
 
 %.bam: %.sam