]> git.donarmstrong.com Git - samtools.git/shortlog
samtools.git
2010-07-23 Heng Liadded an alternative prior
2010-07-23 Heng Licalculate posterior allele frequency
2010-07-23 Heng Li * samtools-0.1.8-3 (r627)
2010-07-22 Heng Li * preliminary multisample SNP caller.
2010-07-14 Heng Li * samtools-0.1.8-2 (r617)
2010-07-14 Heng Li * added mutli-sample framework. It is not working...
2010-07-13 Heng Li * samtools-0.1.8-1 (r615)
2010-07-12 Heng LiRelease samtools-0.1.8
2010-07-12 Heng Lifixed a compiling issue for Windows
2010-07-12 Heng Lifixed a bug in sorting when output to stdout (by Peter...
2010-07-09 Heng Lichange the command line option of pileup
2010-07-09 Heng Limake pileup work with CIGAR with I/D at the beginning...
2010-07-09 Heng Li * make tview more friendly
2010-07-08 Heng Li * samtools-0.1.7-r607
2010-07-08 Heng Liremoved a debugging example
2010-07-08 Heng Li * samtools-.1.7-18 (r605)
2010-07-02 Heng Lifixed a minor bug in idxstats
2010-06-16 Heng Lifixed a minor bug in indexing
2010-06-15 Heng Lichange printf() to puts in exporting
2010-06-14 Heng Liminor fix. No actual effect.
2010-06-14 Heng Liadded Makefile targets to compile shared/dynamic library
2010-06-13 Heng Li * samtools-0.1.7-17 (r596)
2010-06-13 Heng Li * samtools-0.1.7-16 (r595)
2010-06-13 Heng Lifixed a bug for unmapped sequences in indexing
2010-06-12 Heng Lirename iterf as iter
2010-06-12 Heng Li * samtools-0.1.7-15 (r592)
2010-06-12 Heng Li * samtools-0.1.7-14 (r591)
2010-06-12 Heng Li * samtools-0.1.7-13 (r590)
2010-06-12 Heng Li * samtools-0.1.7-12 (r589)
2010-06-11 Heng Li * samtools-0.1.7-11 (r588)
2010-06-11 Heng Li * samtools-0.1.7-10 (r587)
2010-06-11 Heng Li * samtools-0.1.7-9 (r586)
2010-06-11 Heng Li * samtools-0.1.7-8 (r585)
2010-06-11 Heng Li * samtools-0.1.7-7 (r584)
2010-06-11 Petr DanecekInitial release on behalf of Aylwyn Scally
2010-05-07 Petr DanecekAdded a note about the indels coordinates
2010-04-23 Petr DanecekAdded the possibility to print or not to print the...
2010-04-15 Petr DanecekMore descriptive message for space separated tags
2010-04-14 Petr DanecekSpeedup with -i, no need to query the reference all...
2010-03-15 Petr DanecekFixed the order of sequences in the header
2010-03-04 Petr DanecekAdded possibility to select indels only and fixed a...
2010-02-27 On behalf of... Improve the invalid 'BAM\1' magic number error message...
2010-02-26 Petr DanecekImproved efficiency of header parsing
2010-02-24 Heng LiUpdated export2sam.pl by Chris Saunders from Illumina.
2010-02-17 Petr DanecekFixed filtering of SNPs near indels. Added min indel...
2010-02-12 Petr DanecekPrint an error for pileups in simple format
2010-02-11 Heng Liadded a hidden option in pileup to output the base...
2010-02-09 Petr DanecekAdded possibility to specify a custom column title...
2010-02-09 Petr DanecekAdded the -d option to limit maximum depth for indels.
2010-02-03 Petr DanecekAdded VCF header
2010-02-01 Heng Li * samtools-0.1.7-6
2010-01-11 On behalf of... Put the right filename in the error message.
2009-12-14 Heng Li * samtools-0.1.7-5 (r528)
2009-12-11 Petr DanecekFixed a bug in knet_seek
2009-12-11 Petr DanecekSmall fix in VCF format: dot for the empty INFO field
2009-12-11 Petr DanecekAllow tabs in the CO header field
2009-12-10 On behalf of... Depend on libbam.a rather than the phony target, so...
2009-12-10 On behalf of... Fix a bug in compiling bgzip: this also needs knetfile...
2009-12-01 Heng Li * samtools-0.1.7-4 (r522)
2009-12-01 Heng Li * samtools-0.1.7-3 (r521)
2009-12-01 Heng Li * samtools-0.1.7-2 (r520)
2009-11-30 On behalf of... Put libraries at the end, so they can resolve reference...
2009-11-30 On behalf of... Also clean *.exe (for Cygwin users using this makefile).
2009-11-30 On behalf of... Index files should be opened in binary mode, not text...
2009-11-27 Heng Lianother example program
2009-11-27 Heng Li * samtools-0.1.7-1 (r515)
2009-11-24 On behalf of... Format 'c'-encoded auxiliary fields correctly, as ...
2009-11-16 Heng LiUpdate Makefile.mingw for the same reason
2009-11-16 Heng LiFixed a bug in compiling razip
2009-11-10 Heng LiRelease samtools-0.1.7 (r510)
2009-11-06 Heng Li * samtools-0.1.6-22 (r509)
2009-11-06 Heng Li * samtools-0.1.6-21 (r508)
2009-10-26 Heng Li * samtools-0.1.6-19 (r494)
2009-10-26 Heng Li * samtools-0.1.6-18 (r493)
2009-10-24 Petr DanecekAdded sam_header_line_free call for sam_header_parse2
2009-10-24 Heng Li * BUGGY VERSION
2009-10-24 Heng Li * BUGGY VERSION
2009-10-24 Heng Li * BUGGY VERSION. Please NOT use it.
2009-10-24 Heng Li * This revision is SERIOUSLY BUGGY. Please NOT use it.
2009-10-23 Petr DanecekNow possible to merge multiple HeaderDict dictionaries
2009-10-22 Petr Danecek(no commit message)
2009-10-22 Petr Danecek(no commit message)
2009-10-19 Heng Li * samtools-0.1.6-17 (r484)
2009-10-19 Heng Li * samtools-0.1.6-16 (r483)
2009-10-19 Heng Li * samtools-0.1.6-15 (r482)
2009-10-18 Heng Li * samtools-0.1.6-14 (r480)
2009-10-18 Heng Liadded a small unitity to parse SRA XML files
2009-10-18 Heng Li * samtools-0.1.6-13 (r479)
2009-10-14 Heng Li * samtools-0.1.6-12 (r478)
2009-10-10 Heng Li * samtools-0.1.6-11 (r477)
2009-10-09 Petr DanecekAdded the sam2vcf.pl script.
2009-10-08 Heng LiUnfinished modification. Please do not use this revision...
2009-10-08 Petr DanecekRemoved the offending knet_seek message.
2009-10-06 Petr DanecekBug fix - faidx on RAZF compressed files now working.
2009-10-02 Heng LiClarify the meaning of a region like "chr2:1,000,000".
2009-10-02 Heng LiFixed minor bugs in novo2sam.pl (on behalf of Ken Chen...
2009-09-29 Heng Li * samtools-0.1.6-9 (r470)
2009-09-29 Heng Li * samtools-0.1.6-9 (r469)
2009-09-28 Heng Li * samtools-0.1.6-7 (r468)
2009-09-28 Petr DanecekChanged the mode for newly created files to 0666. This...
next