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2012-04-17	Heng Li	r572: added "bedcov" command	commit \| commitdiff \| tree
2012-04-17	Heng Li	change getline() to mygetline()	commit \| commitdiff \| tree
2012-04-17	Heng Li	updated to the latest kseq	commit \| commitdiff \| tree
2012-04-03	Heng Li	Merge branch 'master' of github.com:samtools/samtools	commit \| commitdiff \| tree
2012-04-03	Heng Li	compiling errors on some machines	commit \| commitdiff \| tree
2012-03-30	Heng Li	shrink bam1_t::m_data when sorting	commit \| commitdiff \| tree
2012-03-29	Heng Li	Merge branch 'master' of github.com:samtools/samtools...	commit \| commitdiff \| tree
2012-03-24	Heng Li	filter on query sequence length (not aln len)	commit \| commitdiff \| tree
2012-03-24	Heng Li	move seqtk to a separate project	commit \| commitdiff \| tree
2012-03-22	Heng Li	change SO	commit \| commitdiff \| tree
2012-03-22	Heng Li	a little more accurate mem estimate	commit \| commitdiff \| tree
2012-03-22	Heng Li	control compression level at command line	commit \| commitdiff \| tree
2012-03-20	Heng Li	optionally surpress /[12] in bam2fq	commit \| commitdiff \| tree
2012-03-20	Heng Li	Merge branch 'master' into mt	commit \| commitdiff \| tree
2012-03-20	Heng Li	bugfix: downsampling not always working	commit \| commitdiff \| tree
2012-03-19	Heng Li	name sorting checkes READ1 and READ2	commit \| commitdiff \| tree
2012-03-19	Heng Li	sorting also considers strand	commit \| commitdiff \| tree
2012-03-18	Heng Li	change the default block size in sorting	commit \| commitdiff \| tree
2012-03-18	Heng Li	multi-threaded sorting	commit \| commitdiff \| tree
2012-03-18	Heng Li	added .gitignore	commit \| commitdiff \| tree
2012-03-18	Heng Li	added mt comression to merge	commit \| commitdiff \| tree
2012-03-18	Heng Li	updated the alphanum comparison function	commit \| commitdiff \| tree
2012-03-18	Heng Li	avoid wasting CPU time by the master thread	commit \| commitdiff \| tree
2012-03-18	Heng Li	use conditional variable	commit \| commitdiff \| tree
2012-03-18	Heng Li	bugfix in caching	commit \| commitdiff \| tree
2012-03-18	Heng Li	multi-threading working on toy examples	commit \| commitdiff \| tree
2012-03-18	Heng Li	preliminary implementation; not tested	commit \| commitdiff \| tree
2012-03-18	Heng Li	updated with the latest bgzf library	commit \| commitdiff \| tree
2012-03-09	Heng Li	On behalf of Petr: multi-allelic GT	commit \| commitdiff \| tree

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