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2012-06-12	peterjc	Fix missing declaration for getopt on Mac OS X	commit \| commitdiff \| tree
2012-03-26	peterjc	Check reference length in BAM header against embedded...	commit \| commitdiff \| tree
2012-03-26	peterjc	Cope with trailing CIGAR H (or S and H) in 'samtools...	commit \| commitdiff \| tree
2012-03-26	peterjc	Cope with leading CIGAR H (or H and S) in 'samtools...	commit \| commitdiff \| tree
2012-03-26	peterjc	Tolerate CIGAR H operators in 'samtools depad'	commit \| commitdiff \| tree
2012-03-26	peterjc	Include leading CIGAR P operators in 'samtools depad'	commit \| commitdiff \| tree
2012-03-26	peterjc	Record actual sequence in unpad_seq (fixes apparently...	commit \| commitdiff \| tree
2012-03-23	peterjc	Correct my error message; assed some comments	commit \| commitdiff \| tree
2012-03-23	peterjc	Add TODO note about reference lengths	commit \| commitdiff \| tree
2012-03-23	peterjc	Cope with CIGAR D or P to mark gaps in an embedded...	commit \| commitdiff \| tree
2012-03-22	peterjc	Check current reference sequence matches RNAME in samtools...	commit \| commitdiff \| tree
2012-03-22	peterjc	Support CIGAR X/= in depad	commit \| commitdiff \| tree
2012-03-22	peterjc	Helpful error message on bad CIGAR in unpad_seq	commit \| commitdiff \| tree

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